Vibrio metoecus: QYQ96_13410
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Entry
QYQ96_13410 CDS
T09673
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vmt
Vibrio metoecus
Brite
KEGG Orthology (KO) [BR:
vmt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vmt03016
]
QYQ96_13410 (rnb)
Enzymes [BR:
vmt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
QYQ96_13410 (rnb)
Transfer RNA biogenesis [BR:
vmt03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
QYQ96_13410 (rnb)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
WKY94962
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Position
2:complement(44959..46995)
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AA seq
678 aa
AA seq
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MFQDNPLLAQLKQKIQETLPKKEGTIKASDKGFGFLEVDSKTSYFVPPPYMKKCMHGDKV
VAFIRTENEREVAEPSELIEQSLTRFIGRVKLFKGKLNVAPDHPQLKKLSLKAKTKKGLN
EADFQEGDWVVAHLVRHPLKGDDGFFAQISHKITDANDKIAPWWVTLAENDLPNSEPAGI
DDWQLKDDADLVREDLTAVPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIADPTAYIT
PEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTVSKDGVIGD
DIRFFAANIKSHARLVYDHVSDWLETGHSEQWQPSEDIAQVVRDLYAFSQARATWRETHA
VVFPDRPDYRFELSADNDVVAIHADMRRTANRLVEESMITANICAGKTLQATFGLGVFNT
HAGFKAEKMADVVELMAAHGAPNADAETLATVEGFAALRRWLATQETSYLDNRIRKYQSY
SEIGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAHILGKAPVQTPDETVGEELAL
HRKHHKIAERNVADWLYARTLADEPAKETRFQAEIFDINRPGMRVRLLENGAMAFIPGAL
ILDNKERIECNGEDGTVSIDKEVVYKLGDVLEIVLAEVNQENRSLVGKPTQVFADLASET
QVNVEPSTDSEENSKPQT
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgttccaagacaatccgctcctcgcgcagcttaagcaaaaaatccaagaaaccctgcct
aaaaaagaaggcaccatcaaagccagtgacaaaggttttggcttcctcgaagtcgatagc
aaaaccagctactttgtgccgcctccttatatgaagaagtgtatgcatggcgacaaagtc
gtggctttcatccgcaccgaaaatgaacgtgaagtcgcagagccttctgaacttatcgaa
caatcactgactcgcttcatcggccgcgtaaagctatttaaaggcaaactgaacgtagcg
cctgatcatccgcagctgaaaaagctatctctgaaagcgaaaactaagaaaggcctcaac
gaagctgacttccaagaaggtgactgggtggtcgctcatcttgtccgccaccctcttaaa
ggtgatgacggtttcttcgcgcagatctcacacaaaatcaccgatgccaatgacaaaatt
gcaccttggtgggtaacactcgcggaaaacgatctgcctaacagcgaaccagccggcatt
gatgattggcaattgaaagatgatgcagacttggttcgtgaagatctgacagcagtacct
tttgtgactatcgatggtgaatccaccaaagatatggatgatgcgttgtacgcacaacaa
ttacctaacggtgattttgcgctaaccatcgcgattgcagacccaaccgcttacatcaca
ccagaagatgaaatggataaagtggcacgcgagcgtggctttaccatttatttgccgggt
cgcaacattcccatgttgccacgcgatctcgccgatgagctttgctctttgatggaaaac
caagttcgtccagccctttgctgctcagttactgtgagtaaagatggcgtgattggcgat
gatattcgtttcttcgcagccaacatcaaatctcatgcacgcctagtttatgaccatgtt
tctgactggttggaaacgggccactctgaacaatggcaaccgagtgaagacattgcccaa
gtggtacgtgatctctacgctttctcacaagctcgcgcgacatggcgtgaaacccatgcc
gtggtgttcccagatcgcccagactaccgttttgaactgagcgcggataacgatgtcgtg
gcaattcatgcggacatgcgccgcacagcaaaccgcttggtcgaagagtcgatgatcact
gccaacatctgtgcgggtaaaactctgcaggccacttttggcttgggcgtatttaatacc
cacgccggttttaaagcagagaaaatggccgacgtggtggaattaatggctgcacacggt
gcgccgaatgcggacgccgaaacactggcaacggtggaaggctttgctgctctgcgccgc
tggctagccacacaagaaactagctacctcgataaccgtattcgtaaataccaaagctac
agtgaaattggcaaccagccactccctcacttcgcgatgggtcttgatgtgtatgcgact
tggacttcaccgattcgtaaatacggcgacatgatcaaccaccgtctactgaaagcacac
attttgggcaaagctcctgtgcaaacgccggatgaaacagtgggtgaagaacttgccctg
caccgtaagcaccacaagattgctgaacgtaatgtggccgattggctctatgcgcgcaca
ctggctgatgaacctgcgaaagaaactcgcttccaagccgagatctttgacatcaaccgc
ccaggcatgcgtgttcgcttactcgaaaacggcgcaatggcctttattccgggagcgctg
atcctcgataacaaagaacgtatcgagtgcaatggcgaagatggtacggtatcgattgat
aaagaagtggtgtacaaactcggtgatgtgctggaaatcgttcttgctgaagtgaatcaa
gaaaaccgcagcttagtaggtaagccgacgcaagtatttgctgatctagcttcagagaca
caagtcaacgtagagccctccacagatagtgaagaaaacagtaagccacaaacttag
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