Vibrio natriegens: PN96_01670
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Entry
PN96_01670 CDS
T04636
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
vna
Vibrio natriegens
Pathway
vna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PN96_01670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vna03019
]
PN96_01670
03016 Transfer RNA biogenesis [BR:
vna03016
]
PN96_01670
Enzymes [BR:
vna01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PN96_01670
Messenger RNA biogenesis [BR:
vna03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PN96_01670
Transfer RNA biogenesis [BR:
vna03016
]
Prokaryotic type
tRNA degradation factors
PN96_01670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
OB_RRP5_4th
KH_2
S1_RRP5
KH-I_KHDC4-BBP
DUF3016
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
ALR14743
UniProt:
A0AAN0Y3L7
LinkDB
All DBs
Position
1:349431..351566
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AA seq
711 aa
AA seq
DB search
MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVAGQDFFPL
TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS
VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSQTELDASRLDLVV
AGTESAVLMVESEADNLTEEEMLAAVVYGHDQQQVVINAINEFKAEVATPAWDWVAPEEN
TVLKNKIAELAEAKLVEAYQITEKMARYERIHAIAAEVNEVLLAEDPEADTKEIHTIFHD
LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGILPRTHGSALFTRGETQAIVTATLGTQ
RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD
EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS
DILGDEDHLGDMDFKVAGTNTGVTALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE
AISGARDDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA
TEGAAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIAEKRV
EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVEKPAEEAAAEAPAAKDE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgttcgaaaaaccagttgttaaaacgttccagtacggtaaccacacggttactctagaa
actggcgttatcgcacgtcaagctacagcagcagttatggttacaatggacgatacagca
gtattcgtttcagttgtaggtaagaaagaagcagttgctggtcaagacttcttccctcta
acagtaaactaccaagagcgtacttacgctgctggtaaaatccctggtggtttcttcaag
cgtgaaggtcgtccatctgaaggcgaaacgctaacagctcgtctaatcgaccgtccaatc
cgtccgctattcccggatgcattcaaaaacgaagtacaagttattgctacggttgtttct
gtaaaccctgatgttcaaccagatatcccaacaatgattggtacgtctgcggcactagct
atctctggtattccatttaatggtcctatcggtgcagcacgtgttggtcacatcgacggt
caacttgttcttaacccaagccaaactgaactagatgcatctcgtttggatcttgttgtt
gcgggtacagagtctgcagtactgatggttgagtcagaagctgacaacctaactgaagaa
gaaatgctagcagcggttgtttacggtcacgatcaacaacaagttgtgatcaacgcaatc
aacgaatttaaagctgaagtggcaactccagcttgggattgggttgctccagaagagaac
acagtacttaagaacaagattgctgaactagcagaagctaagcttgttgaagcttaccaa
atcactgagaagatggctcgttacgaacgtatccacgcgatcgcagcagaagttaatgaa
gtgctactagctgaagatccagaagcggacacgaaagaaatccacactatcttccatgac
ctagagaagacagttgtacgtcgtagcatcatcgcgggtaacccacgtatcgatggtcgt
gagaaagacatggttcgtgcgctagacgtacgtactggtattcttccacgtactcacggt
tctgctctattcactcgtggtgaaactcaggcgatcgttacagcaactcttggtacgcag
cgtgacgcgcaaatcattgatgagctgacaggtgagcgtaaagatcacttcctactacac
tacaacttccctccatactgtgtaggtgaaactggttttgtaggttctccaaagcgtcgt
gaaatcggccacggtaaactagctaagcgtggtatcgcagcagtaatgccatctgttgac
gagttcccatacacagttcgtgttgtatcagaaatcactgaatctaacggttcatcttca
atggcttctgtatgtggtacttctctggctcttatggatgctggtgtgccaatcaagtct
tctgttgcgggtatcgcaatgggtcttgttaaagaaggcgacgatttcgttgttctttct
gacatccttggtgacgaagaccacctaggtgacatggactttaaagtagcaggtactaac
actggtgttactgcacttcaaatggacatcaagatcgaaggtatcactaaagaaatcatg
caaattgcgcttaaccaagcacaaggtgcacgtaagcacatcctttctgtaatggatgaa
gcgatttctggtgctcgtgatgatatctctgagtttgctccgcgtattcatacaatgaag
atcagcgctgagaagatcaaagacgttatcggtaaaggtggtgcagttatccgtgctcta
actgaagagacaggtacaactatcgaaatcgaagacgacggcacgatcaaaattgcagcg
actgaaggagcagcagcgaaagaagcgatccgtcgcattgaagagatcactgctgaagtt
gaagttggccgtatctacactggtaaagtggcacgtctggcggactttggtgcattcgta
acagtacttccaggtaaagatggtctagtgcatatttctcaaatcgcagaaaaacgtgtt
gagaaagtgtcagactacctaactgaaggtcaggaagttcaagttaaagttcttgaaatc
gaccgtcagggacgtgtacgtctaagcatgaaagaagcagtagaaaagccagctgaagaa
gcagcggctgaagcacctgctgctaaagacgagtaa
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