Vibrio natriegens: PN96_08310
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Entry
PN96_08310 CDS
T04636
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vna
Vibrio natriegens
Brite
KEGG Orthology (KO) [BR:
vna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vna03032
]
PN96_08310
03400 DNA repair and recombination proteins [BR:
vna03400
]
PN96_08310
Enzymes [BR:
vna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PN96_08310
DNA replication proteins [BR:
vna03032
]
Prokaryotic type
DNA Topoisomerases
PN96_08310
DNA repair and recombination proteins [BR:
vna03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PN96_08310
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
ALR15988
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Position
1:complement(1817221..1819848)
Genome browser
AA seq
875 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKDFVVKSSVGHVRDLPTAGQSTGEKAAAISTKGMSAEE
KARVKKEKDRKALIKKMGINPYHDWEANYQILPGKEKVVSELQKLAKDADYVYLATDLDR
EGEAIAWHLREIIGGDEERYKRVVFNEITKNAIQQAFQTPGELNMDGVNAQQARRFMDRV
VGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREINAFVPEEFWDIHANTKTKDKADF
KLLVAQKDGVAFKPVNEAETKAAMSVLEKASYEVCKREDRPTKSKPSAPYITSTLQQAAS
TRLGYGVKKTMMLAQRLYEAGYITYMRTDSTNLSAEAVDAVRDFIGSEFGDKYLPASPLK
YGSKEGAQEAHEAIRPSSVDVKAEDLQGVDADAHKLYALIWNQFVACQMTPAEYDSTTIS
VKAEEFTLKAKGRILKFDGWTRVQRPMGKNEDTILPAVQLGDKLNLESLDPKQHFTKPPA
RFTEAALVKELEKRGIGRPSTYASIISTIQDRGYVKVDQRRFYAEKMGEIVTDRLDDSFN
DLMNYDFTARMEQKLDQIAEGEVNWKSVLDNFFTDFTGDLEKADLDESEGGMKLNHIVMT
DIECPTCGRPMGIRTASTGVFLGCSGYALPPKERCKTTINLGDEEGIINVLEEDVETAAL
RAKKRCPICETAMDAYLIDDKRKMHVCGNNPNCEGYIVEYGEFKVKGYDGPVVECDKCGS
DMVLKNGRFGKYMDCTSETCKNTRKILKNGEVAPPKEDPVHFPELPCENSDAYFVLRDGA
SGLFMAASNFPKSRETRAPLVSELALYEERLPEKFKYLATAPQEDPDGRPAVVRFSRKTK
ENYVRSEENGKPSGWTALYVDGKWEVTDKRKKAKA
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcactcgttatagtggagtcaccagccaaggcaaagacaataaataagtac
cttggtaaagactttgttgttaagtctagtgttggtcatgtgcgtgatctgcctacggcc
ggccaaagcactggtgagaaagcagctgccatttcaactaaagggatgagtgctgaagag
aaagcacgagtcaaaaaagagaaagatcgtaaagcgctgatcaaaaaaatggggatcaac
ccatatcacgactgggaagcgaattatcagattcttcctggcaaagaaaaagtagttagc
gaattacaaaaattagccaaagatgctgattacgtctatctcgcaaccgatttggaccgc
gagggggaagcaatcgcatggcaccttcgtgagatcatcggtggcgatgaagagcgatac
aaacgagttgtttttaacgaaattacgaaaaatgctatccagcaagctttccagacgcct
ggtgagttaaatatggatggcgtaaacgcgcagcaagctcgtcgattcatggaccgcgtg
gttggcttcatggtctctccattactatggaagaaagttgctcgtggcttgtctgccggc
cgtgttcagtcggttgcggttaagttgctggtagagcgtgagcgcgaaatcaatgcattt
gttccggaagagttctgggacatccatgcaaacaccaagactaaagacaaagcggatttc
aaactgctggttgctcagaaagacggcgtagcgtttaagccagttaatgaggcagaaacc
aaagcagcgatgtctgtgctggaaaaagctagctacgaagtttgcaagcgtgaagaccga
ccaacgaaaagtaagccgtcagcgccttacatcacttcgactttgcagcaagcagcaagt
acccgtttaggctatggcgttaagaagaccatgatgctggctcaacgcttgtatgaagcg
ggttacatcacctatatgcgtactgactcaactaacttgagtgcagaagctgtggatgct
gtccgtgacttcatcggttctgagtttggtgacaagtaccttccagcttcaccgttaaaa
tacggcagcaaagaaggggctcaagaagcgcacgaagcgattcgaccgtctagcgttgat
gtgaaagcggaagacctgcaaggtgtcgacgcagacgctcacaagctttacgcattaatt
tggaatcagttcgttgcgtgtcaaatgacgccagcagaatacgattccacaaccatcagc
gtcaaagccgaagagttcacattaaaagccaaaggccgcatcctgaagtttgacggttgg
actcgcgtacaacgtccaatgggcaaaaacgaggacacaatccttcctgcggtgcagctt
ggcgataagctgaacctagagtcacttgacccgaaacagcactttaccaagccgccagca
cgctttacagaagctgcactggttaaagaacttgaaaagcgtggtattggccgtccatcg
acttacgcgtctatcatctcgacgattcaggatcgtggctacgtgaaagtcgaccagcgt
cgattctacgcagagaaaatgggtgagatcgttacagaccgtctggacgatagctttaat
gatttgatgaactacgactttaccgcgcgtatggaacaaaagctggaccaaatcgcagaa
ggcgaagtcaactggaaatcagtactggacaacttctttactgacttcaccggtgacctt
gaaaaagccgacctggatgagtctgaaggtggtatgaagcttaaccacattgtgatgaca
gacatcgaatgtccgacatgtggccgcccaatgggtattcgtacagcatccaccggcgta
ttcctaggttgttctggttatgcactgccacctaaagagcgttgcaaaaccaccatcaac
ttaggcgatgaagaaggcatcatcaacgtcttagaagaagacgtagaaaccgcagcgctg
cgtgccaagaaacgttgtccaatctgtgaaacagcgatggacgcgtacctaatcgacgat
aaacgtaagatgcacgtttgtggtaacaacccaaactgtgaaggttacatcgttgaatac
ggcgagtttaaagtgaaaggctatgatggaccggttgttgagtgtgacaagtgtggttct
gacatggtgcttaagaatggtcgcttcggtaaatacatggattgcacgagcgagacatgt
aaaaacacccgtaagattctaaagaacggtgaagtcgcgccgccgaaagaagatccagtg
catttccctgaactgccatgtgaaaactcggacgcttactttgtgttgcgtgatggggca
tctggtctgtttatggcagccagcaacttccctaaatcacgcgaaacgcgagcgccactt
gtttcagagcttgcgctttacgaagaacgcttaccagagaagttcaaatatctcgcgaca
gcaccgcaggaagaccctgatggtcgtccggcagtggttcgttttagccgtaaaacgaaa
gagaattacgttcgctctgaagagaacggcaagccaagcggttggactgcgctttatgtc
gatggtaaatgggaagtcaccgacaaacgtaaaaaagcaaaagcttaa
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