Vibrio natriegens: PN96_13775
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Entry
PN96_13775 CDS
T04636
Name
(GenBank) RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
vna
Vibrio natriegens
Pathway
vna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PN96_13775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vna03019
]
PN96_13775
Enzymes [BR:
vna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PN96_13775
Messenger RNA biogenesis [BR:
vna03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PN96_13775
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
ALR16964
UniProt:
A0AAN1CWR0
LinkDB
All DBs
Position
1:complement(3002978..3004291)
Genome browser
AA seq
437 aa
AA seq
DB search
MKKTHITEQKFADLGLEPQVIDGLDKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKT
LAFLTATFNHLMTTPEHEGRKPTQPRAIIMAPTRELAIQIYNDAETLIASTGLKAALAYG
GESYDKQLAKLEDGVDILIGTTGRIIDFYKQRVFNLNYIQAVVLDEADRMFDLGFIKDIR
FLFRRMPEPKERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSN
EDKMALLQTLIEEEWPDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKREKILE
QFTKGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGNSISFA
CEEYAINLPAIEEYIEHTIPVSEYDASALIQDLPAPIRMRAPRTQQRRTNTGGTRSGNRK
QQGRRPRQPRQSAPKQS
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagacgcatatcacagagcaaaagttcgccgatttggggttagagccccaagtt
attgatggattggataaaaaagggtttgagttttgtacccctatccaagccttggcgttg
ccggtactgctcaccggccaagacatcgcaggccaggcccaaacgggcactggtaaaaca
ctcgcgtttctcactgcaaccttcaaccacctaatgacgacaccggagcacgaaggtcgc
aaaccaacacaaccacgtgccatcatcatggcgcctacgcgtgagttagcgattcagatc
tacaatgatgctgaaactctgattgcaagcacgggcctaaaagcagcactggcttacggt
ggtgaaagctacgacaagcaactggctaagctagaagacggcgtcgatatcctgatcggt
accactggtcgtattatcgacttctataaacagcgtgtatttaatctaaactacattcaa
gcggtagtgttagatgaagccgaccgcatgttcgatcttggttttattaaagacatccgt
ttcttgttccgtcgtatgccagagccaaaagaacgtctgaacatgctgttctcagcaacg
ctgtcttaccgcgtacaagaactcgcgtttgaacacatgcataacccagaacatgttgtg
gtagaaccagagcaaaaaactggtcaccgcatccaggaagaacttttctacccttcaaac
gaagacaaaatggcgcttcttcaaacacttatagaagaagaatggccagatcgtgcgatt
atatttgctaacaccaagcacaaatgtgaatcagtttggggccacctggcggcagacggc
catcgtgttggtctattaactggtgatgtaccgcagaagaaacgtgaaaagattcttgag
cagttcactaaaggtgatgttgatatcctagtggcgacggatgtagcggctcgtggcctg
catattcctcaagtaacacacgtattcaactacgatctgccagacgattgtgaagactac
gtacaccgtatcggtcgtaccggtcgtgcaggtgcgagtggtaactctatcagctttgct
tgtgaagagtacgcgatcaacctacctgcgattgaagaatacattgaacacactatccct
gtatcggaatatgatgcatcagctctaattcaagatctgccagctccaatccgtatgcgt
gcaccacgaacgcaacaacgccgtacgaatacaggtggtactcgctctggtaaccgtaag
caacaaggacgtcgtcctcgtcagccacgtcaatcagcgccaaaacaatcataa
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