Vibrio natriegens: PN96_17725
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Entry
PN96_17725 CDS
T04636
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vna
Vibrio natriegens
Pathway
vna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PN96_17725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vna03019
]
PN96_17725
Enzymes [BR:
vna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PN96_17725
Messenger RNA biogenesis [BR:
vna03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PN96_17725
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Rubella_Capsid
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
ALR17807
UniProt:
A0AAN0Y7J1
LinkDB
All DBs
Position
2:complement(639739..641274)
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AA seq
511 aa
AA seq
DB search
MGFTSLGLSAPILKAIQEKGYDTPSPIQAQAIPAILEGKDVMAAAQTGTGKTAGFTLPIL
ERLSNGPRVRSNHIRALILTPTRELAAQVQENVFMYSRHLPLTSAVVFGGVKINPQMLRL
RKGADVLVATPGRLMDLYSQNAIKFDQLEVLVLDEADRMLDMGFIRDIRKILDLLPKQRQ
NLLFSATFSNEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPSDVKKKAPMLVKLIND
GDWRQVLVFMRTKHGANRLAKFLVEQNLPAAAIHGNKSQGARTKALADFKSGEIRVLVAT
DIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLVCAIEAPELFAIER
LIQEVLPRKELDGFAPTNVVPESKLDTRPIKPKKPKKPKKPKAPQAEGSNAQPADKKASN
VAGKPKRRFNGNGKGNNSGNKNGANQAGAGKPKGNREGQGRSNTQSNGNKPNGNKSGNGG
KPAGSRKPQGAKPAGNKPSGQRRKARPQPAN
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgggttttacctcgttaggtctatctgctccaatccttaaagctattcaggaaaaaggc
tacgataccccttctccaattcaggctcaggcaattccggcaatattggaagggaaagac
gtcatggcagcagcacagactggtacaggtaaaacagcaggctttacgctgccaatcctg
gagcgtttgtccaatggacctcgcgttcgtagtaaccatattcgcgctttaatcctgacc
cctacccgtgagcttgcggctcaggtacaggaaaacgtcttcatgtacagccgtcacttg
ccgcttacgagcgccgtggtatttggtggtgtaaaaatcaatccgcaaatgctgcgcctg
cgtaaaggtgcggatgtactggtcgcgactccaggtcgtctaatggacctttacagccag
aacgcaattaagttcgaccaactggaagtactggtgctggacgaagcggaccgtatgtta
gatatgggcttcattcgcgatattcgtaagattctcgatttactacctaagcagcgtcag
aacctactgttctctgcgacgttctcaaatgagatacgcgaccttgcgaaaggtttggtg
aacaaccctgtcgagatctcagttaacccagcaaactctacagcacgaaccgttgaacaa
agtatttacccatcagacgtgaagaaaaaagcgccgatgctggtgaagctgattaatgat
ggtgactggcgacaagtactggtattcatgcgtacaaaacatggcgcaaaccgcttggct
aagttcctggtagagcaaaatctaccagcggcagcgattcacggtaataaaagccaaggt
gcacgtaccaaagcactggctgattttaaatcgggtgaaattcgtgtgctggttgcgact
gacatcgccgctcgcggtattgatattcctcagttgccacaagttgtgaactttgaattg
ccaaaagtggcagaagattacgttcaccgcattggtcgtactggtcgtgcgggcgaagtg
ggcaaagcgatctctctggtttgtgcgattgaagcgccagaattatttgcgatcgagcgt
ttgatccaagaagttttaccacgtaaagagcttgatggtttcgcaccaacgaatgtcgtg
ccagagtcaaaactggatacgcgtccgattaagccgaaaaaaccaaagaaacctaaaaag
ccaaaagcacctcaagcggaaggcagcaacgcgcaacctgccgataaaaaagcctctaac
gttgctggtaaacctaagcgccgtttcaatggtaacggcaagggtaataacagcggcaac
aaaaatggcgctaaccaagccggagcgggtaaaccaaaaggtaaccgtgaaggccaaggg
cgttcaaacacccaatcaaatggcaacaagccaaatggaaataaaagtggtaatggcggg
aagccagcaggtagtcgcaagccacaaggcgctaaaccagccggcaataaaccatcgggt
cagcgtcgcaaggctcgtccacaaccagcaaactaa
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