Vibrio natriegens: PN96_20120
Help
Entry
PN96_20120 CDS
T04636
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
vna
Vibrio natriegens
Brite
KEGG Orthology (KO) [BR:
vna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vna03400
]
PN96_20120
DNA repair and recombination proteins [BR:
vna03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PN96_20120
Archaeal homologous recombinant proteins
PN96_20120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
SMC_N
AAA_21
AAA_16
DUF2634
Motif
Other DBs
NCBI-ProteinID:
ALR18242
LinkDB
All DBs
Position
2:1190287..1193343
Genome browser
AA seq
1018 aa
AA seq
DB search
MKPIKLTMQAFGPFAKTETIDFEKLGNNPLFLINGPTGSGKTSILDAICFALYGETTGNE
RQGIQMRCDLATADLPTEVTLDFSLHGKVYRVTRAPEQEAPKARGDGMTVKKHTASLYEL
GDSEKLITSKTTQVKTEITNIIGLTETQFRQVMVLPQGKFRELLLASSKEREEIFGQLFQ
TDIYKKIEYALKDKASAISKAKNEFDNQIRGALQVAGVSSEEELIQQKESVSEQLEQEKK
SEQACLEKLNTIKSELQKAQALSAEFTRREQAEASLKLHLKNSEAIDARQQRLEKAKSAS
KIELQYVAVQNAKTQSQELTQKISSLSHNLTEATSVAEGKEAELKTAKQNVEQVPQLTQL
QFNLEGMKEKLIEKVDLEAKIANGLQEKQQFETKLQQYIALKEKLTQEAQQGQKTLDQAR
VDVALVASVDAEIKQKQRLLQDVQKLSGLKQELAKYDALTSSKQQNLEQDKQAYVSAQQS
ADRLELKWHNAQAAVLAQRLQAGEACPVCGSCEHPHPAQFSEEEVTKEQVQTARAQERAA
QTSYNQLSNQLEQHYVVSRQYQKQLDDLSEELGEHATTEAVQIQAELQSAHEKLQRLTAI
DIAQLEKNVEQLNQRCVVGETKINELQNQMAANESTIKANQDQLSKLLANIDPKYGSVEV
LEQEITQTKEQIQRLNNNLESAQSQLQQAMLAKSNIESQLTTNKQWLAESELKLNEANSN
WQKALGESRFEDEETYLQSKATEQELQSWQQEIDQFKQTQIKLEQTLSDLKLALQDIEKP
DIEAINANLNIQQQHYVESRNKLDSVRSIFERLEKVRSDIASLHDKNSKLEDEYKVFGTL
YDVASGKTGSRISLHRFVLGVLLDDVLIQSSQRLSLMSKGRYILARKTEGFKGAAGRGLD
LVVEDGYTGKMRDVATLSGGESFMAALALALGLSDVVQSYSGGIRLDTLFIDEGFGSLDP
ESLDLAIQTLVDLQQTGRMIGVISHVSELKEQMAQRIDVEPSRVGSTVSVKSQMALAD
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgaagcctatcaaactcaccatgcaagcttttggtccattcgcaaaaacggaaaccatc
gatttcgagaagcttggtaataacccgctatttttaattaatggaccaacgggttcaggt
aaaacgtcgattctcgatgcgatttgtttcgcgctttatggtgaaactacaggtaatgag
cgccagggtattcagatgcgatgtgatttggccactgccgatctgccaaccgaagttact
ttggatttttcactgcacggaaaggtataccgagttactcgtgccccggaacaagaagcg
ccgaaggctcgtggtgatggtatgaccgtgaaaaagcacacggcttctctgtatgagctg
ggtgatagcgaaaaactcattaccagcaaaaccacgcaagttaagaccgaaattaccaat
attattggcttaacagaaacacagtttcgccaagtgatggtacttcctcaagggaagttt
cgcgagttacttctggcaagctctaaagagcgcgaagagattttcggccagctgttccag
actgacatttacaaaaaaattgagtatgcgctcaaagataaagcgagcgcgatcagtaaa
gcgaagaatgagtttgataaccagattcgcggtgccttgcaagttgcgggagtaagttca
gaagaggaattgattcaacagaaagaatccgtttcagaacaactggaacaagagaaaaag
agtgagcaagcttgtctggaaaagctcaacaccattaagtcggagttacaaaaagcgcag
gcattgtcagctgagtttactcgccgtgaacaagctgaggcatcgctgaagttacattta
aaaaattcagaagcaatagacgcgcgtcagcaacgattagagaaagcgaaaagcgcgagc
aaaatcgagttacagtatgttgctgtacagaacgctaagacgcaatcacaagagttaacc
cagaagattagttcacttagccataacttaactgaagcgacgagcgtggcggaaggaaaa
gaagctgagctcaaaaccgcgaagcagaatgttgaacaagtgcctcaattgacgcaattg
cagtttaacctcgaaggaatgaaagaaaagctgattgaaaaagtggacttggaagcaaaa
atcgccaacgggttacaagagaaacagcaatttgaaacaaaactgcagcaatacatcgct
ttaaaagaaaaactgacgcaagaagcacagcagggtcaaaaaacgcttgatcaagcccgt
gttgatgtcgcgttagtggccagtgtcgacgctgaaattaagcaaaagcaacgcctttta
caagatgttcaaaaactgtctggtttgaagcaagagcttgctaagtatgatgctttgacc
tccagcaagcaacaaaaccttgagcaagataaacaggcctatgtctcggcacaacagtca
gctgatcgcctggaactaaaatggcacaacgcgcaagcggcagttttagcccaaaggctg
caagcaggggaagcgtgtccggtttgtggtagttgtgagcatcctcatcctgcacagttt
agtgaagaagaggtgacaaaagagcaagttcaaacggctcgcgctcaagagcgtgctgcg
caaacgtcatacaaccagctcagtaaccaactggagcaacactatgttgtttctcgacaa
tatcaaaagcaactggatgacctctcagaagagcttggtgaacacgctacgactgaagcg
gtacaaattcaggcagaacttcaatccgctcatgaaaaattacagcgtttgacagccatt
gatattgctcagttagagaaaaacgtcgagcagcttaaccagcgctgcgttgttggtgaa
acaaagatcaatgagctgcaaaatcaaatggcggcgaatgaatcaacaatcaaggcaaat
caagatcagctcagtaaactgttggcaaacatagacccgaaatatggctcggtagaagtt
ttagaacaggaaattactcaaaccaaagagcagattcagcgccttaataacaatctggaa
agtgcacagtcgcagcttcaacaagcgatgttagccaagtcgaatattgaaagtcagcta
accaccaacaagcaatggttagcggagtcggagctaaaactcaacgaggcaaattcgaac
tggcaaaaagcgctgggcgaaagccgttttgaggatgaagaaacttatcttcaaagcaaa
gcgacagaacaagaactgcaatcgtggcaacaggaaatcgatcaatttaagcaaactcaa
atcaagcttgagcaaacacttagtgatcttaaactagcattacaagatattgaaaaacca
gacattgaagctattaatgccaacttaaacattcaacagcaacactatgttgaatcgaga
aacaagcttgattctgttaggtcaatttttgaacggctggaaaaagtgcgcagtgatata
gcgagtttgcatgacaagaacagcaagctagaagatgagtacaaagtctttggtacgctt
tacgatgtggcgagtggtaaaacaggcagtcgtatcagtttacatcgttttgtactcggt
gttcttttagacgatgtcttaatccaatcctcgcaacgattaagtttgatgagtaagggc
agatacattctggcacgtaagacagaagggtttaaaggcgcagcaggccgagggcttgat
ctcgtcgttgaagatggctacaccggtaaaatgcgagacgttgcgacgctgtctggtgga
gagtctttcatggctgcactggctttagcgcttggtctgtctgatgtggtgcagtcatac
agcggtggtattcgcttggatacactgttcattgacgaaggtttcggtagcctggatcct
gaatctttggaccttgccattcagaccttagtcgacctccagcaaacaggccgcatgatc
ggtgtaatttctcacgtctcggaacttaaagaacagatggcgcaacgcattgatgtggag
ccgtctcgtgttggttcaactgtttcggttaagtctcaaatggcattagctgactaa
DBGET
integrated database retrieval system
