Vibrio natriegens: PN96_20805
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Entry
PN96_20805 CDS
T04636
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vna
Vibrio natriegens
Pathway
vna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PN96_20805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vna03019
]
PN96_20805
Enzymes [BR:
vna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PN96_20805
Messenger RNA biogenesis [BR:
vna03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PN96_20805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
AAA_19
Helicase_RecD
P-loop_SecA
Helicase_C_2
ERCC3_RAD25_C
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
ALR18371
UniProt:
A0AAN0Y5U7
LinkDB
All DBs
Position
2:complement(1336355..1337608)
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AA seq
417 aa
AA seq
DB search
MSVNFADLGIEQNLVETLSTLNIVTPTPVQEKSIPHVLEGKNLLAAAQTGTGKTAAFGLP
IIQSVQQEKLNGTPKALILVPTRELAQQVFESLSQYASQTALRIVCVYGGISIGVQKKKL
EDGADILIATPGRLLDHLFNGNVNISKTNTLVLDEADRMLDMGFWPDLQRILRRLPDEKQ
IMLFSATFEKRIKTIAYKLMDSPVEIEVTPPNTTAETVTQIVYPVDKKRKRELLAYLIGS
KNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALIAT
DVAARGLDIQELEQVINFDMPFKAEDYVHRIGRTGRAGNSGLAVSLMSRDEEYLLHAIEN
LLDQRLPQEWLAGFEPSLIEEVEPERHGGGGRKSRSAEKRKLKAKLAIHKNRGKNRR
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgtccgttaattttgctgaccttggcattgaacaaaatctggtggaaactctgagcaca
ttaaacatcgtgactccgacaccggtgcaagaaaagtcgattccccatgttctggaagga
aaaaacctgctcgctgctgcacaaacgggtactggtaaaacggctgcgtttggactgcct
attattcaaagcgtacagcaagaaaaactgaacggaacgccaaaagctctaattttggta
cctacgcgtgaactcgctcaacaagtcttcgaaagtttgtctcagtacgcgtcacagacg
gcattacgcattgtttgtgtatatggtggtatcagtattggtgttcagaagaaaaaactt
gaggatggcgcggacattctgattgcgacacctggacgcttgctggatcatttgtttaac
ggcaatgtaaacatctcaaagacgaatacgcttgtactcgatgaagctgatcgtatgtta
gatatgggattttggcctgatttgcaaagaattctgcgccgcttgccagatgaaaaacag
atcatgctattttccgcaacgtttgaaaagcgcattaaaaccattgcttataagctgatg
gattctccggttgaaattgaagttactccaccaaacacgaccgctgaaacggttacacag
atcgtttatcccgtcgacaagaagcgtaaacgtgaattactcgcctatttaattggttca
aaaaactggcaacaagtgctggtgtttaccaaaacaaaacagggtagtgatgaactggcg
aaagagttaaagctagatggcataaaagctgtgtctattaatggtgataaatcacaaggc
gctcgtcaacgcgcattggatgaatttaaacagggtaaagtacgtgcattgattgcgact
gatgtcgcagcccgagggcttgatattcaggaactagagcaagtaattaactttgatatg
ccatttaaagctgaagattacgtacaccgtattggtcgtacaggtcgagcgggtaattct
ggacttgccgtatccttaatgagccgagacgaagagtatctgttgcatgcgattgaaaac
ttactggatcagcgattgccacaagaatggttggcgggttttgaacctagtttaatcgaa
gaggtcgagcctgaacgtcacggtggtggtggccgtaaaagtcgctcggcagaaaaacga
aaacttaaagccaagttagctatccataaaaatcgtggtaaaaaccgtcgataa
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