Vibrio natriegens: PN96_21520
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Entry
PN96_21520 CDS
T04636
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vna
Vibrio natriegens
Pathway
vna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PN96_21520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vna03019
]
PN96_21520
03009 Ribosome biogenesis [BR:
vna03009
]
PN96_21520
Enzymes [BR:
vna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PN96_21520
Messenger RNA biogenesis [BR:
vna03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PN96_21520
Ribosome biogenesis [BR:
vna03009
]
Prokaryotic type
rRNA helicases
PN96_21520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Flavi_DEAD
WSD
Motif
Other DBs
NCBI-ProteinID:
ALR18499
UniProt:
A0AAN1CXN5
LinkDB
All DBs
Position
2:complement(1514674..1516593)
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AA seq
639 aa
AA seq
DB search
MQDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGVDALGKAQTGTGKTAAF
SLPLLNKLDLNQRKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMR
ALKNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPES
AQRVLFSATMPPMLKKIVERFLRDPVTVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLL
ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTKSSMEEIQLPLRDQVAEARLAQLGAELEAEKEHKSLDKFAELVEKLQTSLEIDPAM
LAAMLLKRQQGKRPLFYIGEDPMVEAIERDKQRRKERREGGRDGGREGGRSFNNQDWDTY
QLQVGREQGVQVKDIVGALANELGLGKGSIGAIKLAQGHTFVQLPKAMTSEAANKLSKLR
IRQQDVGAVVCDFDDFRESRGGRRDGGRRDGGGYRGNRDGGARREGGRREGGFRGNREGS
RDGNREGAERRFDRNRGGDHRGNYRGERGHGRGRRTPEA
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgcaagattctgttattcaattcagtgatttatctctgaatgattctatcctttctgct
ctagacggaatgggtttcgtgtcaccaactccaattcaggctgcggcaatcccacacctg
ttggaaggtgttgacgcgctgggcaaggcacaaacgggtacaggtaaaacggcagcattc
tctctgcctcttctcaacaaactagatctaaaccaacgtaaaccacaagcaatcgtactt
gctccgactcgtgagctagcgattcaggttgcagcggaaatgaaaaaccttggtaaaaac
atcaagggcttgaaagttctagaaatctacggtggtgcttctatcgttgatcaaatgcgt
gcacttaagaatggtgcgcacgttgttgttggtactcctggccgtgttcaagacctgatc
aaccgtgaacgtctacatctagacgaagttaatactttcgtacttgatgaagcggacgaa
atgctaaacatgggtttcgtggacgacgtaactgcaatcatggagcacgctcctgaatca
gcacaacgcgttctgttctctgcgactatgcctccaatgctgaaaaagattgttgagcgc
ttccttcgtgaccctgtaacggtagacgttgctggtaagaaccacactgtagacaaagtt
caacagcagttctgggtagtgaagggtgtagagaaagatgaagcgatgtctcgtcttctt
gaaactgaagaaacggatgcgtcaatcgtattcgtacgtactcgtcaagatactgagcgt
ctagctgactggctttcagctcgtggctttaaagctgcagcactacacggtgatatccct
cagtctctacgtgagcgtactgttgatcacatcaaacagggtgttatcgatatccttgta
gcgactgacgttgttgcacgtggtcttgacgttccacgtattactcacgtatttaactac
gacatcccattcgatgtagagtcatacattcaccgtatcggtcgtacaggccgtgctgga
cgtaaaggtaaagcgatccttcttgttcgcactaaccaaatccgcatgcttcgtactatc
gagcgtgtaactaagtcatcaatggaagaaattcaacttcctctacgtgaccaagttgct
gaagctcgtctagctcagctaggtgcagaactagaagctgagaaagagcacaaatcacta
gataagtttgctgagttggttgagaaactacaaacttctctagaaatcgacccagcaatg
cttgctgcgatgcttcttaagcgtcaacaaggcaaacgcccactgttctacatcggtgaa
gacccaatggtagaagcaattgagcgtgataagcagcgtcgtaaagagcgccgtgaaggt
ggtcgtgatggtggtcgtgaaggtggccgcagcttcaacaaccaagattgggatacttac
cagctacaagttggccgtgagcaaggtgttcaagttaaagacatcgttggtgctctggca
aatgaacttggtctaggtaaaggttctatcggtgctatcaagctagcgcaaggtcatact
ttcgttcagctaccaaaagcaatgacttctgaagccgcgaacaagttgagcaaactacgt
atccgtcaacaagatgttggtgcggtagtatgtgacttcgatgatttccgcgagtctcgt
ggtggtcgtcgtgacggcggacgtcgtgatggtggtggttaccgtggtaaccgtgatggt
ggtgctcgtcgcgaaggtggccgtcgtgaaggtggtttccgtggcaaccgcgaaggtagc
cgtgatggtaaccgcgaaggtgctgagcgtcgtttcgaccgtaaccgtggtggtgatcac
cgtggtaactaccgtggtgaacgtggtcacggccgtggccgtcgcactccggaagcataa
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