Virgibacillus necropolis: CFK40_01000
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Entry
CFK40_01000 CDS
T04976
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vne
Virgibacillus necropolis
Pathway
vne03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vne00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CFK40_01000 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vne03021
]
CFK40_01000 (rpoC)
03400 DNA repair and recombination proteins [BR:
vne03400
]
CFK40_01000 (rpoC)
Enzymes [BR:
vne01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CFK40_01000 (rpoC)
Transcription machinery [BR:
vne03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CFK40_01000 (rpoC)
DNA repair and recombination proteins [BR:
vne03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CFK40_01000 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ASN03690
UniProt:
A0A221M7S1
LinkDB
All DBs
Position
complement(178883..182506)
Genome browser
AA seq
1207 aa
AA seq
DB search
MLDVNNFEYMKIGLASPEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPQKDWEC
HCGKYKRVRYKGVVCDRCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFAAYIVTESGNTPLEKKQLLSEKEYRAYYDKYGKSFKAQMGAEAIRKLLH
DIDLEKEVVALKEELKTAKGQRRTRAIKRLEVLESFRNSGNDTSWMVLDVLPVIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKMYQCGLPKE
MALELFKPFVMKELVGRGLAHNIKSAKRKIERVHPEVWDVLEEVIREHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTMEREDAIGEGSIFKDTNEALIAYQNGYVHLHTRVAVQ
ASSLNNKTFTEEQHNQLLLTTVGKLVFNEILPESFPYINEPTNSNLEVCTPAHYFVEKGT
NVKEEIKKRDTNLPFKKGILGDIIAEVFKRFKISETSKMLDRMKDLGFSYSTKAGMTVGI
SDIVVLKEKEVILVEAQTKVDNVQKQFRRGLITEEERYDRVIAIWSKAKDDIQAKLMKSL
DSRNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVRDADCGTDRGLKVSAIKDGAELIEPLI
DRLIGRTIFETVRHPKTGDVIIEDDTVISEDQARTIIDSGIEEVTIRSAFTCNTKHGVCQ
KCYGRNLATGDEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF
EARHPKGQAVISEVDGTVHEIKEVKDKQEIIVQGEVEQRPYTVPYNARIKVAEGDVVIAG
QELTEGSVDPKELLQVQGVDGVQTYLLREVQRVYRMQGVEIGDKHVEVMVRQMLRKVRVV
DSGDTSVLPGSLLEIHQFKEANHGILNEGKQPAVGKPVLLGITKASLETDSFLSAASFQE
TTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMQRYRKIEASLDDLKPESDENKEAE
VETETVN
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
ttgctagatgtaaataactttgagtatatgaaaatcggtttagcttcacctgagaaaatt
cgctcgtggtcatacggcgaggtaaagaaaccagaaacaattaactaccgtacattaaaa
cctgagaaagacggcttattttgtgaacggatctttggtccacaaaaagactgggaatgt
cattgtgggaaatacaaacgtgtccgttataaaggcgttgtttgtgatcgatgtggagta
gaggttacaaaggcaaaggtacgtcgtgaacgaatgggacatattgaattggctgctcct
gtttcacatatttggtattttaaagggattcctagtcggatgggacttgttttagatatg
tcacctcgtgctttggaagaggttatctattttgcggcgtatatcgttacagaatcaggt
aataccccacttgagaaaaagcagttgctttcagaaaaagaataccgtgcttattatgat
aaatatggtaagtcttttaaagctcaaatgggtgctgaggcaattcgaaagcttttacat
gatatcgaccttgagaaagaggtagttgcattaaaagaggagttaaaaacagctaaaggc
caacgtagaactcgtgcgattaaacgattagaggtattagaatcattccgtaattctgga
aatgacacgtcatggatggtattagatgtattaccagtaattcctccagaaattcgccca
atggtacaacttgatggcggacgttttgcaacatctgatttaaatgatttgtatcgccgc
gttataaaccgtaacaatcgcttgaaacggttgctcgatcttggtgcgccaagcatcatc
gtacaaaatgaaaagcgtatgttacaagaagcggttgatgcattgattgataatggtcgt
cgtggacgcccagttactggtccaggtaatagaccgttaaagtcactttcacacatgttg
aaaggaaaacaaggtcgtttccgtcaaaacctattaggtaaacgtgttgactattcaggg
cgttcggttattgtggtaggacctagcttaaaaatgtatcaatgtggattaccaaaagaa
atggcacttgaattatttaagccatttgttatgaaagagttggtaggtagaggtttagca
cataatatcaagtcagctaaacgtaaaattgaacgtgttcatcctgaggtttgggatgtt
ttagaggaagtaattcgtgaacacccagtattactaaatcgagcacctacattgcataga
ctcggaattcaagcctttgagccaacattagtagaaggtcgcgcaattcgtttgcatcca
ctagtttgtacagcatacaatgctgactttgatggtgaccaaatggccgtgcacgttccg
ctatctgctgaggcgcaggctgaagcacgtatcttgatgttagcagcccaaaatattctt
aatccaaaagatggtaaaccagttgttacaccatcacaggatatggtattaggtaattat
tatttgacaatggagcgcgaagacgcaataggtgaaggtagtatatttaaagatactaat
gaagcattgattgcatatcaaaatggatatgttcatctgcataccagggttgctgttcaa
gcaagttccttgaataataaaacatttaccgaggaacaacataatcaattgttgttaaca
acagtaggtaaattagtatttaatgagattttaccagaatcattcccgtatattaatgag
ccgacaaacagtaatcttgaagtttgcacaccagctcattattttgttgaaaaaggtaca
aatgttaaagaagagatcaagaaacgcgatactaacctaccatttaaaaagggtatctta
ggtgacatcatcgcagaagtctttaaacgatttaaaatcagtgaaacgtctaaaatgctt
gaccgcatgaaagatcttggctttagttattcaacaaaagctggtatgacagtaggtata
tcagatatcgtagtgctaaaagaaaaggaagtaattctagttgaagcacaaacgaaagtt
gataatgttcagaaacagttccgcagaggtctgatcactgaagaggaacgttatgatcga
gtaattgcgatttggtcaaaagcaaaagatgacattcaagctaaactaatgaaatctctt
gattctagaaaccctatctttatgatgagtgattccggagcaagaggtaacgcatcaaac
tttacacagttagctggtatgcgaggattaatggcaaacccggctggacgtattattgag
ctaccgattaagtcaagtttccgtgaagggttaactgtactggagtactttatctctacc
catggtgctcgtaaaggacttgccgatacagcacttaagacagctgactcaggttacctg
acacgtcgtttagttgatgttgcgcaagatgttattgtacgcgatgcagattgtggtaca
gatagaggcctaaaagtttctgcaattaaagatggagcagaattgattgaaccattgata
gaccgcttgataggtcggacaatatttgagactgttcgccatcctaaaactggcgatgta
attatcgaggacgatacggttatttcagaagatcaagcgagaacaattatagattctgga
attgaagaagtaacaatccgttctgcatttacatgtaatacgaagcatggcgtatgccaa
aaatgttatggacgtaaccttgcaactggtgatgaagtagaagtaggtgaagcagtaggt
attattgctgctcaatctattggtgaaccaggtacacagttaactatgcgtacattccac
actggtggagttgctggggatgatatcacacaaggtttaccacgtattcaagaaattttt
gaagcgcgtcatccgaaagggcaagctgttattagtgaagtcgacggtacggttcatgaa
atcaaggaagttaaggataagcaagagattattgttcaaggtgaggtagaacaacgtcca
tatacagttccttataacgctcgaattaaagtggcggaaggagacgtagtaattgctggt
caagaactgacggaaggttccgtcgatccaaaagaacttcttcaggttcagggtgttgat
ggtgttcaaacttaccttctccgcgaggttcaacgtgtttaccgtatgcaaggtgtagaa
attggagataaacacgttgaggtaatggtacgtcaaatgctacgtaaggtacgtgtagtt
gactcaggggatacaagcgtattacctggatcattacttgaaatccatcaattcaaggaa
gctaatcatggcattctaaacgaaggaaaacagcctgccgttggtaaaccggtattacta
ggtattacaaaagcttcacttgaaacagattcattcttatctgcagcttcattccaagaa
acaactcgcgtattaacggatgctgcaattaaaggtaaacgcgatgagctgttaggattg
aaagaaaatgttatcattggtaaacttgttcctgctggtacaggaatgcaacgttaccgt
aaaattgaagcttcactggacgatttgaaaccagaatcggatgaaaacaaagaagcagaa
gttgaaacagaaacagtaaactaa
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