Virgibacillus necropolis: CFK40_01330
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Entry
CFK40_01330 CDS
T04976
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vne
Virgibacillus necropolis
Pathway
vne03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vne00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CFK40_01330 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vne03400
]
CFK40_01330 (mfd)
Enzymes [BR:
vne01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CFK40_01330 (mfd)
DNA repair and recombination proteins [BR:
vne03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CFK40_01330 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_22
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
ASN03737
UniProt:
A0A221M7X1
LinkDB
All DBs
Position
complement(244435..247959)
Genome browser
AA seq
1174 aa
AA seq
DB search
MKGIDTFLESKDDIKSIISGIESGMQEQLVAGLSGSARSLLVSVIEDSIDKPVLLITHQL
VQAQQLYDDLSEFMGDQNVHLYPVNELIASEIAIASPELRSQRIEALTEWSKKKSGILIA
PVTALKRILPPTSYWEKYQLHFRLGEDIDIDTYLNSLVDMGYERQTMVTTPGEFSRRGGI
IDIYPITEAHPIRIELFDEEVDSIRYFDAETQRSLDKKKEVTIGPATELLLTEEDLLSGA
NRIETELAETLKKLKSNEAKEALSEALNQDLERLKNLEHFQEMYKYIGFLYKDPASLLDY
LPKNGLIILDEMSRIQETATNIDTEEAEWYSNLLEANKMVKNSKFSFDWHEVWQKMEQPR
LYMSVFMRHIPNTQPQNIINLSSRSMQEFHGQMHLFKNELKRWMKSESSVVILVPNKKRM
EKIHSIFADYDIEATMAKSLKLPVEKPTIAIGNISSGIELPMHKLVLITENELFKKKTKR
VRKRQKISNAERIKSYQELKIGDYVVHANHGIGKYIGIETLEMSDMHKDYMLIRYASDDK
LFVPIDQIDLVQKFVGSEGKEPKLYKLGGSEWAKVKKKVQSSVEDIADDLIKLYAEREAQ
KGYAFSEETEMQREFEAAFPYQETEDQIRCIVEIKQDMEKERPMDRLLCGDVGYGKTEVA
IRAAFKAVADGKQVAILVPTTILAQQHYETIRERFQDQAVTIGLLSRFRTKKQLKETTAG
LKSGIVDIVIGTHRLLSKDVVYRDLGLLVVDEEQRFGVKHKEKIKQMKTNVDVLTLTATP
IPRTLHMSMLGVRDLSVIETPPENRFPIQTYVLEYNPILIREAIEREMSRGGQVFFLYNR
VENIDSIAREIGTLVDDAKIAVAHGRMNETELENVMFGFLEGEFDVLVSTTIIETGVDIP
NVNTLIVYDADRMGLSQLYQLRGRVGRSNRVAYAYFTYKKDKVLTEVAEKRLQAIKEFTE
LGSGFKIAMRDLSIRGAGNLLGSQQHGFIDSVGFDMYSKMLTDAIEARKFGKDVIDMKQF
EPELALKTDAYIPDTYIKDEKQKIDMYKRFQTLTSDDDFEDLREELVDRFGDYPEEVANL
FDVSSMKMHARNERVESITEKGKKMELLVDENRSQQIDGSKLFTLANEFGRGVQLGTDNK
KLKITIQWPKDAEHKRYELATQFMEQLASVNRND
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
ttgaagggtattgatacgtttttagaatcaaaagatgatataaagtctattataagtgga
attgaatctgggatgcaggaacaacttgtagcgggactttcaggatcggccaggagcttg
ctagtttctgttattgaggattctattgacaaacctgtgctgttgattacacaccaacta
gtccaagcacagcaattatacgatgatttgtcagagtttatgggtgatcagaatgttcac
ttatatccagttaatgaactaattgcgtcggaaattgcaatcgctagcccagaattaaga
agtcaacgaattgaagcattgacagaatggtcgaaaaaaaaatcagggattttgattgct
cctgttactgcattgaagcgaattttaccaccaacaagctattgggaaaagtatcaactt
cattttcggcttggtgaagatattgatatagatacctatctaaactcacttgtagatatg
ggttatgaacgccaaacaatggtgacaacccctggtgagtttagccgtcgtggtgggatt
atagatatctatcctattactgaggcccatcctattcggattgaactttttgatgaagag
gtagactccatacgttactttgatgcagagacgcagcgctcattggataaaaagaaagag
gttactatcggacctgcaacagagctgctattaacggaagaggatttactttcaggagcg
aatcgaatagaaactgaattagcagaaacgctaaagaagttaaaatcgaacgaggctaag
gaagcattatcagaagcgctaaatcaggatcttgagcgattaaaaaatcttgagcatttt
caagaaatgtacaagtatattgggtttctctataaggatcctgctagtttgttagattat
ttaccaaagaatggtctaattatcttagacgaaatgagtagaattcaggaaacggctacg
aacatcgatacggaagaggcagaatggtatagcaatttacttgaagcgaacaaaatggta
aaaaacagtaaattttcgtttgattggcatgaagtatggcaaaagatggagcagccacgg
ttgtatatgtctgtatttatgcgacatattcctaatacacaaccacaaaacatcattaat
ctatcatctcgttcgatgcaggagtttcacggtcaaatgcatctatttaaaaatgaatta
aaacgttggatgaaaagtgaatcctccgttgtcatcttagtaccaaacaaaaagcgtatg
gaaaagattcattccatttttgcagattatgacattgaagcaaccatggcaaaaagttta
aaattaccagttgagaaacctaccatcgcgattgggaatattagcagtgggattgaactg
ccaatgcataaattggtattaatcacggaaaatgaattatttaagaaaaaaacaaagcgg
gtcagaaaaagacaaaagatatccaatgctgaacggattaaaagctatcaggaattaaaa
attggcgactatgttgttcacgcaaaccatggtataggtaaatatatcggtattgaaaca
cttgaaatgagtgatatgcacaaagattatatgctgattcgctatgccagtgatgacaag
ctctttgttcctattgaccaaatagatttggtccaaaaatttgttggttcagaggggaaa
gaaccgaaactatacaaattaggtggtagtgaatgggctaaggttaagaaaaaggttcaa
tcatcagtcgaggatattgcggacgacttaatcaagctttatgctgaacgagaagcacaa
aaagggtatgcattttcagaagaaacagaaatgcaacgtgaatttgaagcggcttttcct
tatcaagaaacagaggatcaaattagatgtatcgtggaaattaaacaagatatggaaaag
gaacgtccaatggatcgattgttatgtggtgatgttggatacggtaaaacggaagtggca
attcgagctgcatttaaggccgttgcagatggtaaacaggttgctatcctagtacctaca
actatacttgcgcaacaacattacgaaactattcgcgaacgattccaggaccaagctgtt
acgattggattactcagtcgattccgaactaaaaaacaactcaaggaaacaactgctgga
ttgaaaagcggaatagttgatattgtaatcggtacccatcgtttattatcaaaggatgta
gtataccgtgatttaggattgttagtcgttgatgaagaacaacgatttggtgtaaaacat
aaagaaaaaattaaacaaatgaagacaaatgttgatgtattaacgttaactgcaacacca
attccacgtaccctgcatatgtccatgcttggggttcgggacttatccgtgattgaaaca
ccaccggagaaccggtttccaattcaaacctatgtgttggagtacaatccgattcttatt
agagaagcaatcgaacgggaaatgtcccgaggtgggcaggtgtttttcctctataatcgt
gtagaaaatattgattcaattgctcgagagattggcaccctagtggatgatgctaaaatt
gcagttgcccacgggcggatgaacgaaaccgagcttgaaaatgtcatgtttggcttcttg
gaaggagagtttgatgttctagttagtacgaccatcattgaaacaggtgtagatataccg
aatgtaaatacattaattgtatacgatgctgatcggatggggctaagtcagctttatcaa
ttacgtggaagagttggtcgttcgaatagagttgcttacgcatattttacctataaaaag
gataaggtactgacagaagttgcagaaaaacgtttacaagcaattaaagagtttactgag
cttgggtcagggtttaaaattgcaatgcgagatttgtctattcgtggagcaggtaacttg
ttgggttcacagcagcatggatttatcgattcagtcgggtttgatatgtattccaaaatg
ttaaccgatgccatagaagcaagaaagtttggcaaagacgtcatcgatatgaagcaattc
gagccagagcttgcacttaaaacggatgcctatattccagatacctatattaaggatgag
aagcaaaaaatcgatatgtataaacgctttcaaacgttaacatctgatgacgactttgaa
gatttacgagaggaattagttgatcgttttggcgattatccagaagaagtagcaaatttg
tttgatgtatcatcgatgaaaatgcatgctagaaatgagcgtgttgaatcaattactgaa
aaaggtaaaaaaatggaattgcttgttgacgaaaaccgtagtcaacaaattgatggttcc
aaattgtttacccttgcaaatgaatttggacgtggagttcaacttggaacggataataaa
aagttgaaaattacaatccaatggcctaaagatgcagaacataaacgttatgaattagca
acacagtttatggaacaactagctagtgttaaccggaacgattaa
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