Virgibacillus necropolis: CFK40_09360
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Entry
CFK40_09360 CDS
T04976
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
vne
Virgibacillus necropolis
Brite
KEGG Orthology (KO) [BR:
vne00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vne03019
]
CFK40_09360
03009 Ribosome biogenesis [BR:
vne03009
]
CFK40_09360
Enzymes [BR:
vne01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CFK40_09360
Messenger RNA biogenesis [BR:
vne03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CFK40_09360
Ribosome biogenesis [BR:
vne03009
]
Prokaryotic type
rRNA helicases
CFK40_09360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
Flavi_DEAD
AAA_22
SMC_N
Motif
Other DBs
NCBI-ProteinID:
ASN05210
UniProt:
A0A221MC68
LinkDB
All DBs
Position
1997971..1999284
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AA seq
437 aa
AA seq
DB search
MEKKNFGEFKLHPIMINVIDKLHFEKPTDIQTEVIPAILKGKSVIGQSHTGSGKTHAYLL
PLLNQIDVEKRSVQFVITAPTRELATQIHDEVKKIVKFAGKEQQWISKLLVGGTDKQKMM
EKLKQPPHIVVGTPGRILDLVKEEAISIYSATSFVIDEADLMLDLGFINDVDQLLVRSNK
NVQLLVFSATIPQRLEHFFKKYLENPIHVKIDDQLSPETMEHHLIDTKHRKEADIIVDIS
KVINPYLAIIFTNGKEKANELAESLLEKGLDVGLIHGGLSPRERKRALKDIQNLRFQYIV
ATDLASRGIDIKGVSHVINAQLPKEEDFYVHRVGRTARAGMEGTAISLYNESDIKIISKL
EQKGLSFTFFDIRKGEWIEMKSWNERNLRAKTDVNLDKEAWKRVKKTKKVKPGYKKRMKQ
QQETIKKRLTKNTKNKK
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaaagaattttggagaatttaagctccaccccattatgataaatgttatcgat
aagctacattttgaaaaacctactgatattcagacagaggtaataccagctattctaaag
gggaaaagtgtgattggacaatcccatacagggtcaggaaaaacgcatgcatatctattg
cctctattaaaccagattgatgtggaaaaaaggtcagtacaattcgttattactgcacca
actcgcgaattagcaacgcaaatccatgatgaagtaaaaaaaatcgtaaaatttgcaggg
aaagagcaacagtggatttcaaaattactggttggtggtactgataaacaaaaaatgatg
gaaaaattaaagcagcctcctcatattgtagtaggtacaccaggaagaatattagaccta
gttaaagaagaagccatttctatttattctgcgacttcatttgtcattgatgaagctgac
ttgatgttagaccttggttttattaatgatgtggatcaattgcttgttagatcaaataaa
aatgtacagctccttgttttttctgcaacaattccacagcgcttagaacacttttttaaa
aaatatttagagaatcctattcacgtaaaaatagatgatcaattatcacctgaaacaatg
gagcatcatttaattgatacgaaacatcgtaaggaagctgacatcatagtcgatatctca
aaagtaataaatccttatttagctattatttttacaaatggtaaagaaaaagctaatgaa
ttagcggagtccttgttagaaaaaggattagatgtagggttgatacatggtggtttatct
ccgcgtgaacgaaaacgagcattaaaggatatacaaaatttgcgctttcaatacattgta
gcaactgatttagcatcaagaggaattgatattaaaggtgtaagtcatgtgataaatgca
cagttacctaaagaagaagacttttacgttcaccgggtaggtagaactgcccgagcagga
atggaaggcactgctatcagcctgtacaatgagagtgatattaaaattatcagtaaacta
gaacaaaaaggattatcatttactttttttgatataagaaaaggtgaatggatagagatg
aaatcctggaatgaacgtaatttacgtgcaaaaacagacgttaatttggataaagaagca
tggaaacgtgtgaaaaaaaccaaaaaggttaagccgggatataaaaagagaatgaaacaa
cagcaggaaacaataaaaaaaagacttaccaaaaatacaaaaaacaaaaagtaa
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