Virgibacillus necropolis: CFK40_10915
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Entry
CFK40_10915 CDS
T04976
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vne
Virgibacillus necropolis
Pathway
vne03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vne00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFK40_10915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vne03019
]
CFK40_10915
03400 DNA repair and recombination proteins [BR:
vne03400
]
CFK40_10915
Enzymes [BR:
vne01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CFK40_10915
Messenger RNA biogenesis [BR:
vne03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CFK40_10915
DNA repair and recombination proteins [BR:
vne03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CFK40_10915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
ASN05484
UniProt:
A0A221MCX7
LinkDB
All DBs
Position
2282466..2284019
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AA seq
517 aa
AA seq
DB search
MNKVIDSNLVLEDKLKDHFGFTTFRTGQKEIIRDVMRGKDVLGILPTGMGKSLCYQLPAK
LLRGTTIVISPLISLMMDQVKQLKASNFKEVIALNSFINPVERKALYQHLEDYKLIYVSP
ELIQQNELLDRLKQLSINLLVIDEAHCISQWGHDFRPDYLRLSNIVFELNNPPILALSAT
ATKAIQLDIKKVLKSPNMVDHIYPMDRENIIFSIEKVANDSEKNEKIKKLFDRIRVPTII
YFSSRIATEQLTSFLLKEHPSLRVAFYHGGMETIDRISVQQQFMNNQLDVICCTSAFGMG
INKKDIRFIIHYHLPLQLESFIQEIGRAGRDGKESVSLLLYSDHDYYLPANLMKKELPTE
DDLRFVFQQLNSLYKQKKQLPHKIEQMEQIFHLSEIQWRFLHYQFENHGMIKRNMIVYKR
EKWKHAYHAIHQFIDERLILKEQKLREMIAWIETESCLREQLYKGFQSNYTLPLHSCCSN
CGFNLANWEIEQQEVEQSYHNWEEKLQALFTTGGKNA
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagtaatagattcaaacttagttctagaagataaattaaaagatcattttggt
tttacaacatttcgaactggtcaaaaggaaattataagagacgttatgcgagggaaagat
gtgttaggaatccttccaacaggaatggggaaatcgctttgttatcaattacctgcgaag
cttctaagagggacaaccattgtcatttcaccattaatttccctaatgatggatcaagta
aagcagcttaaagcttctaattttaaagaggtaattgcattaaatagttttatcaatcca
gtagaacggaaagcgctttaccagcatttagaagattacaaattgatatatgtctcacca
gaattaatacagcaaaatgaattgcttgaccgcttaaaacaattaagtataaatttatta
gtcattgatgaagcgcattgcatctcacagtggggtcatgactttcggccggattattta
cggttaagtaatattgtgtttgaactgaacaatccaccgattcttgcattaagtgctaca
gctactaaggcaatacaacttgatattaaaaaggttttaaaaagcccgaatatggttgat
catatttatcctatggatcgcgagaatattattttttcaatagaaaaagttgcaaatgac
agcgagaaaaacgaaaagataaaaaaattgtttgaccgtattcgtgtaccaacaattatt
tacttttcaagcaggatagccactgaacaattaacaagttttttattgaaagaacatccg
tcactaagagtagctttttaccatggtgggatggagactatcgatcgtatttcagtacaa
cagcaatttatgaataatcaattggacgttatctgttgcacaagtgcatttggcatgggg
attaataaaaaagatatccgtttcattattcattatcatttacctcttcagttggaatca
tttattcaggagataggtagagctgggcgggatggaaaagagagtgtcagccttttactt
tattctgatcatgattattatctaccagctaacctaatgaaaaaagaacttccaacagaa
gatgatcttagatttgtatttcagcaactaaatagtttatacaaacaaaaaaaacaacta
ccacacaaaattgaacagatggaacaaatttttcatctaagtgaaattcaatggagattt
ttacactaccaatttgaaaaccatggtatgataaaaagaaatatgattgtgtataaaagg
gaaaaatggaagcatgcatatcacgcgattcaccagtttattgatgagcgtctaattctt
aaagaacaaaaattacgtgagatgatagcttggattgagacggaaagttgtttgcgggaa
caattatataagggatttcaatcaaattatacgttaccacttcattcatgttgcagcaat
tgtggatttaatctagcaaactgggaaatagaacaacaagaagtagagcaaagctatcac
aattgggaagaaaagttacaggctctttttacaaccggaggaaagaatgcgtaa
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