Virgibacillus necropolis: CFK40_11920
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Entry
CFK40_11920 CDS
T04976
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
vne
Virgibacillus necropolis
Pathway
vne03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vne00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFK40_11920 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vne03019
]
CFK40_11920 (rny)
Messenger RNA biogenesis [BR:
vne03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CFK40_11920 (rny)
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
KH_2
FUT8_N_cat
Motif
Other DBs
NCBI-ProteinID:
ASN05666
UniProt:
A0A221MDB2
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Position
complement(2477576..2479138)
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AA seq
520 aa
AA seq
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MDIITIIISALLALIVGIVVGYLIRKSIAEAKISSAEKLAKQIVDEAHRNADASKKEALL
EAKDENHKLRQQTEQDLRERRNESQKQETRLMQKEENLDRKSETLDKRELMLEKKENSLT
EKQQQIEEMESKVEAMIQMQQTELERISGYTTDQAKQIILERIEQEVTHESALMIKEAEN
RAKEEADKKAKSILSLALQRCAADHVAETTVSVVNLPNDEMKGRIIGREGRNIRTLETLT
GIDLIIDDTPEAVILSGFDPIRRETARMALEKLVQDGRIHPARIEEMVDKARREVDEYIR
EIGEETTFEIGVHGLHPDLVKILGRLKYRTSYGQNVLKHSTEVAYLSGLLAAELGEDERL
ARRAGLLHDIGKAIDHEVEGSHVEIGKELGIKYKEHEVVINAIASHHGDEEATSIISVLV
AAADALSAARPGARSETLENYIKRLEKLEEISESFTGVEKSFAIQAGREIRIIVKPDEIN
DLDSVRVARDIRKRIENELDYPGHIKVTVIRETRTVEYAK
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
gtggacattattacaataatcatctccgctttgcttgccctaatcgtcggtattgttgtt
ggttatctgattcgtaaatctatagctgaagctaaaatttcaagtgcagaaaaattagca
aagcaaatagtcgatgaagcacatcgaaatgcagatgcttcgaaaaaagaagcacttctt
gaggcgaaggatgaaaatcacaaacttcgtcagcaaacagaacaagatttgcgtgaacga
cgaaatgaatcacaaaaacaagaaactcgtctaatgcaaaaagaagaaaatctggacaga
aaaagtgaaacgcttgataagcgtgagctcatgttagagaagaaagaaaactcactaaca
gaaaaacaacaacaaattgaagaaatggaaagcaaagtggaagctatgatacaaatgcag
caaacggagcttgaacgcatttcaggatatacaactgaccaagctaaacagattatctta
gaacgcatcgaacaagaggtaacacacgaatcagcactaatgataaaagaagctgaaaat
cgtgcaaaagaagaggcagataaaaaagcaaaaagcattctttctttggcgttacagcgt
tgtgcagcagatcatgtagcagaaactactgtatctgtggttaaccttccaaatgatgaa
atgaaagggcggataattggacgtgagggtcgtaacatacgtacattagaaaccttaact
ggtattgatttaatcattgatgatacaccagaggcagtaattttatcaggttttgatcca
attagaagagaaactgctcgtatggcattagaaaaacttgtacaagatggtcgtattcat
ccagctcgaatcgaagaaatggttgataaggctcgtcgtgaagttgatgaatatatacga
gaaattggggaagagacaacgttcgaaatcggagtacatggtctacatccagatcttgtc
aaaatactcggacgtttgaagtatcgtactagctatggacaaaatgtattgaagcattct
acggaagttgcttatctatccggattgctagctgcagagttaggcgaagatgaaaggtta
gcacgtagagcaggactccttcatgatattggtaaagcgattgatcatgaagttgaagga
agccacgtggaaattggaaaagaacttggtataaaatacaaagagcatgaagtggttatt
aatgcaatagcttcccatcacggtgacgaagaagctacttcaattatttctgttttagtt
gcagcagcagatgcgctatcagctgcacgtcctggtgcaagaagtgaaacactagaaaat
tatatcaaacgattagaaaaacttgaagaaatttctgagtcatttacaggtgttgaaaaa
tcattcgcaattcaagctggtcgggaaattcgaattatcgttaaaccagatgaaataaat
gaccttgattccgttcgggttgctagagatatacgaaaacgaattgaaaatgaacttgat
tatcctggtcatattaaagtgactgttatcagagaaacaagaacagtagagtatgcgaaa
taa
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