Virgibacillus necropolis: CFK40_12045
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Entry
CFK40_12045 CDS
T04976
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
vne
Virgibacillus necropolis
Pathway
vne03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vne00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFK40_12045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vne03019
]
CFK40_12045
03016 Transfer RNA biogenesis [BR:
vne03016
]
CFK40_12045
Enzymes [BR:
vne01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CFK40_12045
Messenger RNA biogenesis [BR:
vne03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CFK40_12045
Transfer RNA biogenesis [BR:
vne03016
]
Prokaryotic type
tRNA degradation factors
CFK40_12045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
SPATA25
S1_RRP5
S1_2
Csc2
Motif
Other DBs
NCBI-ProteinID:
ASN05689
UniProt:
A0A221MDM8
LinkDB
All DBs
Position
complement(2505225..2507336)
Genome browser
AA seq
703 aa
AA seq
DB search
MVEKQLFSTEISGNKFTVEIGELAKQANGACMIQYGDTSVLTAATASKKPKDLPFFPLTV
NYEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFPDGFRNEVQVISTVMSVD
QDCTSEMAAMIGSSIALSISDIPFSGPIAGAVVGQVDGEFVINPTIEQQQKSDIELTVAG
TKDAINMVEAGANEVPEEVMLEAIMFGHDEIKRLVAFQEEIVAAVAKEKTDVTLFELDQD
LLVKIESESKEKLVSAIQVHEKHARERAIEEVKAEVLEAYEGEEDSVIKQVKSILDKMVK
DEVRRLITKEKIRPDGRKPDEIRPLTSRIGVLPRTHGSGLFTRGQTQALSVCTLGALGDV
QILDGLDLEETKRFMHHYNFPQYSVGETGPIRGPGRREIGHGALGERALEKVMPSETEFP
YTVRLVSEVLESNGSTSQASICASTLAMMHAGVPIKAPVAGIAMGLVKSGDDYTILTDIQ
GMEDALGDMDFKVAGTSKGVTALQMDIKIDGLSREILEEALTQAKHGRQHILGHMLETID
KPKTELSEYAPKILTMSIKPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGSVFISSTDS
TMNSKAKKIIEDLVREVEVGQLYLGTVKRIEKFGAFVEIFKGKDGLVHISELAEERTNKV
EDVVSIGDEFMVKVKEVDHQGRVNLSRKAVLLEQKEKSEKSRS
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atggtagaaaaacaattattctccactgaaatttctggtaataaattcacagtagaaatt
ggagaacttgcaaaacaagcgaatggagcttgtatgattcaatatggtgatacttctgta
ttaaccgccgcaactgcatcaaagaaacctaaagatttaccttttttcccattaacggtt
aattatgaggaacgtttatatgccgtgggaaaaatacctggtggttttattaagcgtgaa
ggtcgtccaagtgagaaagcaattttagcatcacgtttgattgaccgtccgatccgacct
ttatttccagatggctttcgaaatgaagtacaagttatcagtaccgtaatgagtgttgat
caagactgtacatcagagatggcagctatgatcggttcatctattgcactaagtatatct
gatattccattcagtggaccaattgctggtgctgttgttggacaagttgatggtgaattt
gtgattaacccaactattgagcaacaacaaaaaagtgatattgaacttactgttgctggc
acgaaggatgcaatcaacatggttgaggctggagcaaatgaagttcctgaggaagtaatg
cttgaagcaattatgtttgggcacgatgaaataaaacggcttgtcgcatttcaagaagaa
attgttgccgctgttgcaaaagagaaaacagatgttacgttgtttgaactagatcaagat
ttactagttaagatcgaaagtgaatcaaaagaaaagctagtatctgcaattcaagtgcat
gaaaaacatgctcgtgaacgggctattgaagaagttaaggcagaagttttagaagcgtat
gaaggcgaagaagatagcgttattaaacaggtgaagtctattcttgataagatggttaag
gatgaggttcgccgattaatcacaaaagaaaaaattcgtccagatggccgtaagcctgat
gaaattcgtccacttacatcacgcattggtgtattgccaagaacgcatggttcaggttta
tttactcgcggacaaacgcaagcattaagtgtttgtacattaggagctttaggtgacgta
caaattcttgacggattagatttagaggaaacgaaacgatttatgcatcattacaatttc
cctcaatatagtgtaggggaaacaggtccaatacgtggtccaggccgtcgtgaaattggt
catggagcattaggagaacgtgcacttgaaaaggtaatgccatcagaaactgaattccct
tacacagttagacttgtatcggaagtattagaatcaaacggatcaacttcacaagcgagt
atatgtgcaagtacgctggctatgatgcatgcaggagttccaattaaagcaccagtagct
ggaattgcaatgggacttgtgaaatcaggtgatgactatacgatcttaacggatattcaa
ggtatggaagatgccttaggtgatatggactttaaagtggctggtacaagtaaaggtgta
accgcattacaaatggatattaaaatcgatgggttatcaagagaaattttagaggaagca
ttaacacaagctaaacatggtagacaacatattttaggtcatatgcttgaaacgattgat
aagcctaaaacagagctttccgaatatgcccctaagattttaacaatgtctattaaacct
gataaaatccgtgatgttattgggccaagcggtaagcaaatcaataaaatcatcgaagaa
actggcgttaaaattgatattgaacaagatggtagcgtgtttatctcttcgactgactca
actatgaatagtaaagcgaaaaaaatcattgaagatttagtacgcgaagttgaagtaggt
caactgtatttaggaacagtaaaacgcatcgagaaatttggtgcatttgttgaaatcttc
aaaggcaaagatggcttggttcatatctctgaattagccgaggaacggacgaacaaagtg
gaagatgttgtatctattggtgatgaattcatggtgaaagttaaagaagtcgatcatcaa
ggtagagttaatctttcaagaaaagccgtactacttgaacaaaaagaaaaaagtgagaaa
tcaagatcataa
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