Virgibacillus necropolis: CFK40_12315
Help
Entry
CFK40_12315 CDS
T04976
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vne
Virgibacillus necropolis
Brite
KEGG Orthology (KO) [BR:
vne00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vne03032
]
CFK40_12315
03400 DNA repair and recombination proteins [BR:
vne03400
]
CFK40_12315
Enzymes [BR:
vne01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CFK40_12315
DNA replication proteins [BR:
vne03032
]
Prokaryotic type
DNA Topoisomerases
CFK40_12315
DNA repair and recombination proteins [BR:
vne03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CFK40_12315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Zn_ribbon_RPB9
Rib_5-P_isom_A
HypA
Motif
Other DBs
NCBI-ProteinID:
ASN05737
UniProt:
A0A221MDL8
LinkDB
All DBs
Position
complement(2556227..2558305)
Genome browser
AA seq
692 aa
AA seq
DB search
MSDYLVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQMGVDTEDEFKPKYITIRGK
GDVLKSLKTAAKKAKKVYLAADPDREGEAIAWHLAHSLGIDETSQCRVVFNEITKDAIKE
SFKHPRSINTDLVNAQQARRILDRLVGYNISPLLWKKVKKGLSAGRVQSVAVKMIMDREK
EIESFTPEEYWSIETNFTKDKDTFEGSFYGVDKKKKELKTEDDVKKVLEQIEGKNFTVDK
VNKRERKRNPAVPFTTSSIQQEAARKLNFRAKKTMMVAQQLYEGIDLGKKAGGITGLITY
MRTDSTRISETAKSEAKEYIVEKHGKEYVGQTKSVKQKEGAQDAHEAIRPTSVTRDPKSL
KAILSRDQFKLYKLIWERFVSSQMAPAVMDTMTVHLLNNGVEFRATGSKIKFKGFMSVYI
EGTDDNKKEENKYLPDLKEGMEVTANDIDPNQHFTQPPPRFTEARLVRAMEEQGIGRPST
FAPTLDTIQRRGYVSIDNKRFIPTELGSIVIELLQEFFPEIIDVDFTVKMEGDLDSIEDG
KNNWVSILDGFYVDFNKRLEVAEKEMEKIEIKDEPAGIDCENCGHEMVYKMGRYGKFLAC
SNFPECRNTKPILKEIGVKCPKCKEGNVVERKSKKKRTFYGCDRFPECDFVSWDKPISRP
CPKCESLLVEKKSKKETQIQCTNCDYKEKTQN
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgtcagattatcttgtaatcgttgagtcgcctgctaaggcaaagacgattgaacgatat
ttaggaaaaaaatataaagtaaaagcttccatggggcatgttcgtgatttacctaaaagc
caaatgggtgttgacacagaagatgaatttaaaccaaaatatataacgattcgtggaaaa
ggcgatgtgcttaaatcgcttaaaactgcagctaaaaaagctaaaaaagtataccttgcg
gccgaccccgacagagaaggagaggccattgcgtggcatctagcacatagtctcggtatt
gatgagacctctcaatgtcgagtggtttttaatgaaatcacaaaggatgctataaaggaa
tcgtttaaacatcctagatctattaacacagacttagtaaatgctcaacaagcacgaagg
attttagaccgattggtaggttataatattagtcctttgctatggaaaaaggtgaaaaag
ggactaagtgcaggtcgtgttcaatcagtagcagttaaaatgattatggatcgtgaaaaa
gaaattgaaagctttactcctgaagaatactggtctattgaaacaaatttcacaaaagac
aaagacacttttgaaggttctttttatggagtcgataagaaaaagaaagaattaaaaacg
gaagatgatgtaaaaaaagtacttgaacaaatagaaggaaaaaactttactgttgataag
gtaaataaaagagaacgtaaacgaaatcctgcagtaccctttactacatcttcaatccaa
caagaagcggcacgaaaattaaatttccgggctaaaaagacgatgatggttgcccaacag
ttatacgaaggaattgacttaggaaaaaaagctggtggaataactggtttgattacctat
atgcgtaccgactcaacacgtatatctgaaaccgctaaatcagaagcgaaagaatatatc
gtggaaaagcacggtaaagaatacgtaggccaaacaaaatctgttaaacagaaagaggga
gctcaagatgcccacgaggcaatcagacccacttctgttacacgtgacccgaaatcgtta
aaagcaatattatcaagagaccaatttaaactttataaattaatatgggaacgttttgta
tcaagtcaaatggcaccagcagttatggatacaatgaccgttcatttattgaataatgga
gttgagttccgtgccacgggttcaaaaattaaatttaaaggatttatgtctgtttacatt
gaaggaacagacgacaacaagaaagaagaaaacaagtatttgcctgatttaaaagaaggt
atggaagtgacggcgaatgatattgatccaaatcagcatttcacacagccacctccaaga
tttacagaagcaagacttgtaagagcgatggaagaacaaggtattggacgaccgtcaaca
ttcgctccaactcttgatacgattcagcgtagaggatatgtaagcattgataataaacgg
tttattccaactgaactaggaagtatcgtgatagaattacttcaggaatttttcccggaa
ataattgacgtagacttcactgtgaaaatggaaggggatctggactccattgaggacggg
aaaaacaattgggtttctatcctagatggtttttatgtagactttaacaaacgtctagaa
gttgcggaaaaagaaatggaaaaaattgaaattaaagatgagccagctggaattgattgt
gaaaattgtgggcatgaaatggtatataaaatgggtcgctatggaaaatttcttgcttgt
tccaattttcctgaatgcagaaatacaaagcctattcttaaagaaattggtgtgaaatgt
ccgaaatgtaaagaaggaaatgtagttgaaagaaaatcgaaaaagaaacgtacattttat
ggatgtgacaggttcccagaatgtgactttgtttcatgggataagccgatttcacgacca
tgtccgaagtgtgaatcattgttagtagagaagaaaagtaagaaagagacacagattcaa
tgtacaaactgtgattataaagaaaagacacaaaactaa
DBGET
integrated database retrieval system
