Virgibacillus necropolis: CFK40_19205
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Entry
CFK40_19205 CDS
T04976
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
vne
Virgibacillus necropolis
Brite
KEGG Orthology (KO) [BR:
vne00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vne03009
]
CFK40_19205
Enzymes [BR:
vne01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
CFK40_19205
Ribosome biogenesis [BR:
vne03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
CFK40_19205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
TRM5-TYW2_MTfase
Methyltransf_25
Methyltransf_15
MTS
Cons_hypoth95
PrmA
Methyltransf_11
N6_N4_Mtase
RrnaAD
PCMT
UPF0020
Methyltransf_4
2-ph_phosp
Ubie_methyltran
Methyltransf_12
Methyltransf_23
POL2_thumb
Motif
Other DBs
NCBI-ProteinID:
ASN06988
UniProt:
A0A221MH44
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Position
complement(4041938..4043317)
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AA seq
459 aa
AA seq
DB search
MAKQTAPVTKNETITLTFEDLTHEGSGVGKINGYPLFVPNALPGEEATVKVIKVNKNFGF
GKVLEFLKTSPERIEPVCHVHCNGCGLQHMSYRLQLEMKMNQVKNAMKKIAHLEHVPVHP
IIGMDNPLHYRNKVQIPVGEKNGELITGFYQKRSHNIIENTETCTTHNEVINEVVKTVRD
VANRLGIQAYNEQAHNGVLRHIMVRTGEETKDIMVVIVTRTDKLPHKDELVKQLKESHPN
IKSIMHNVNHKRTNVILGEKTKVLFGEEYIHDKIGDITFAISAKSFYQVNPSQTKVLYEK
ALEYAEIGSDDVVIDAYCGIGTISLFLAQKAKKVYGVEVVPEAINDAKKNAKLNGITNAE
FIVGEAEKVMPWWTAQGLKPDVIVVDPPRKGCDEELLQAMIEMKPMRIVYVSCNPSTLAR
DLRILEDGGYRTKEVQPVDMFPGTGHVECVSMLEYEVSN
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atggctaaacaaacagcaccagtaactaaaaacgaaacgatcaccttaacattcgaggat
ttaacacatgagggaagcggcgtgggtaaaattaatggttatccattatttgtaccaaac
gcattaccaggggaagaagcaacagttaaggtaataaaagtaaataagaattttgggttc
ggtaaagtacttgagttcctaaaaacaagtccagagcgaattgaacctgtttgtcatgta
cattgcaatggatgcggactccagcatatgagctatcgtctccagcttgagatgaaaatg
aatcaagtgaaaaatgcaatgaaaaaaattgctcatcttgaacatgtaccagtacatccg
ataattggcatggacaacccgttgcactatcgaaacaaagtgcaaatcccagttggtgag
aaaaacggcgaactcataaccggattttatcaaaagcggagccacaatattattgaaaat
accgaaacatgtacgacgcataatgaagtcataaatgaggttgttaaaacggttagggat
gttgctaatcggcttggcatccaggcatataatgagcaagcgcacaatggtgttttgcgt
catattatggttcgaacaggcgaagaaacgaaggacatcatggtcgttatcgtaacaaga
acggataagcttccacataaggacgagttggttaagcaattaaaggaaagccatccaaac
ataaaatccattatgcataatgtaaaccacaaacgtacaaacgttattttaggtgaaaaa
acaaaggtcctctttggcgaagaatatattcacgataaaatcggggatattacttttgct
atttcagcgaaatcattttaccaggtcaacccatcacaaacgaaggtgctttacgaaaaa
gcattagagtacgctgaaatcggcagtgacgatgttgttattgatgcatattgtggcatc
ggaaccatctcactattcctagcccaaaaagccaagaaggtttatggagtggaagtcgta
ccagaagccattaatgacgcaaagaaaaacgctaaactgaacggaattaccaatgcagaa
ttcattgttggagaagcagaaaaggtaatgccttggtggactgcacaaggattgaagcca
gacgtaattgtggtcgatccaccgcgaaaaggctgtgatgaagagctgttgcaggctatg
attgaaatgaagccgatgcggattgtatatgtttcgtgtaatccttctacgttggcacga
gatttgcggattttggaagatggtggatataggacgaaggaagtgcagccggttgatatg
tttccggggacagggcatgtggagtgtgtatcgatgttggagtatgaagtgtctaactaa
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