Virgibacillus necropolis: CFK40_19875
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Entry
CFK40_19875 CDS
T04976
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vne
Virgibacillus necropolis
Pathway
vne03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vne00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFK40_19875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vne03019
]
CFK40_19875
03009 Ribosome biogenesis [BR:
vne03009
]
CFK40_19875
Enzymes [BR:
vne01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CFK40_19875
Messenger RNA biogenesis [BR:
vne03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CFK40_19875
Ribosome biogenesis [BR:
vne03009
]
Prokaryotic type
rRNA helicases
CFK40_19875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
SUa-2TM
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ASN07094
UniProt:
A0A221MHH8
LinkDB
All DBs
Position
complement(4171293..4172771)
Genome browser
AA seq
492 aa
AA seq
DB search
MTTFKELSISSPIMKALEKMGFEEATPIQAETIPLAMQGKDVIGQAQTGTGKTAAFGIPM
IEKIDKTAKKIQGLVVAPTRELAIQVAEEINRLGKFKGIRTLPVYGGQHMDRQIRALKEG
PHIVVATPGRLLDHMRRKTIRIDNVQTAVLDEADEMLNMGFIDDIRDILKGIPEDRQTLL
FSATMPKEIRNIANTLMKSPQEVKVKAKEMTVENIDQYFVEVPERLKFDTLTNHIDIHAP
TLAIIFSRTKKRVDEIAEGLQARGFRAEGIHGDLTQGKRMSVLNKFKGGRIEILVATDVA
ARGLDISGVSHVYNFDIPQDPESYVHRIGRTGRAGRTGEAVSFITPREMAHLHLIEKVTK
SKMKRLMPPTNQDAQRGQQQVTVDKLLKTLESNDLKSYHETANELLQDHDSISVIAAALK
MLTKERRDTPVSISSVQPISVKKAQGHRGNDNRRNKRNYGQRSQGGRNNQGGRNQQGGRN
RKGNFQKRRNRD
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
gtgacaacatttaaagaactaagtatatcaagccccattatgaaagctttagaaaaaatg
ggatttgaagaagcaacgccaattcaagcagaaacaattccacttgcaatgcaaggaaaa
gacgttatcggacaagctcaaacaggtacaggtaaaactgcagcttttggaattccgatg
atcgaaaaaattgataaaacagcaaaaaaaattcaaggacttgtggtagctccaacgaga
gagcttgcaattcaagtagctgaagaaataaatcgtttaggtaaatttaaaggaatccgt
acgcttcctgtatatggtggtcagcacatggatcgacaaattcgagctttgaaagaagga
ccacatattgttgtagcaacaccagggcgtttattggatcacatgcgtagaaagacaatt
cgtattgataacgttcaaactgcagtattagatgaagcagacgaaatgttaaacatggga
ttcattgatgatattcgtgacatcctaaaaggaattccggaagatcgccaaacattgcta
ttttcagcaacaatgccaaaggaaatccgtaatatcgcgaatactttaatgaaatcacca
caagaggtgaaagtaaaagcgaaagaaatgacggtagaaaatattgatcaatatttcgtt
gaagttccagaacgattaaagtttgatacgttaacaaaccatattgatatacatgcacca
actttagcaattatatttagccgtacaaagaaacgcgttgatgaaattgctgaaggctta
caggctagagggttccgtgctgaaggaattcatggtgatttaacacaaggtaaacgtatg
tcagtgttaaataagtttaaaggcggacgtattgaaattttagttgctacagatgtagct
gcacgtggtctcgatatttcaggtgtatcacatgtgtataactttgatattccgcaagat
ccagaaagctatgtacaccgtattggacgtactggacgggcgggacgtactggtgaggct
gtatcattcatcacaccaagagaaatggcacaccttcatttaattgaaaaagttacaaag
agcaaaatgaagcgtctaatgccacctacaaaccaggatgcacaacgtggacaacaacag
gttactgtggataaattattaaaaacacttgaaagtaatgatttaaaatcttatcatgaa
acagcaaatgagttacttcaagatcatgattctatttcagttattgcagctgcgctaaaa
atgttgactaaagagcgaagagatacaccagtttcgatttcgtctgtgcaaccgattagt
gttaaaaaagcacaaggacatcgaggcaatgataatcgccgaaataagcgtaactatgga
cagcgtagtcaaggtggacgtaataaccaaggtggacgcaatcagcaaggcgggcgtaat
cgtaaaggaaactttcagaaacgcagaaaccgcgactaa
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