Vibrio nigripulchritudo: VIBNI_A0004
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Entry
VIBNI_A0004 CDS
T02871
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
vni
Vibrio nigripulchritudo
Brite
KEGG Orthology (KO) [BR:
vni00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vni03032
]
VIBNI_A0004 (gyrB)
03400 DNA repair and recombination proteins [BR:
vni03400
]
VIBNI_A0004 (gyrB)
Enzymes [BR:
vni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
VIBNI_A0004 (gyrB)
DNA replication proteins [BR:
vni03032
]
Prokaryotic type
DNA Topoisomerases
VIBNI_A0004 (gyrB)
DNA repair and recombination proteins [BR:
vni03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
VIBNI_A0004 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
GyrB_hook
HATPase_c
HATPase_c_3
SMC_hinge
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
CCO56228
UniProt:
U4KBZ9
LinkDB
All DBs
Position
1:3732..6149
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AA seq
805 aa
AA seq
DB search
MSENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDII
VTIHEDNSVSVSDDGRGIPTEMHPEENVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV
SVVNALSKQVTLTIHRGGQIHTQTYHHGEPQAPLSVIGDTDKTGTQIRFWPSEDTFSNVE
FHYDILAKRLRELSFLNSGVSIKLVDEREEDKNDHFMFEGGIQAFVEHLNTNKTPIIQKI
FHFDSEREDGITVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDK
EGFSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLQE
FLVENPNEAKTVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSE
LYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG
RDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPPLYKVKK
GKQEQYIKDEDAMSQYQVSLALDNAALHVNAEAPALAGEALEKLVQQYNAGMKLVERMSR
RYPHSLMHEFIYVPRITAEQCQDTAAVEVWGKQLVDQLNAKEVGASQYSLEIEKHEELGV
SLPKVVIRTHGVTHEHVLSVDLFNSKEYGKLADLSEALDGLIEDGAYIKRGERTQPISNF
VEALEWLFKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADQLFTT
LMGDQVEPRRNFIEENALKVANLDV
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaattacgattcatcgagtattaaggtactgaagggtctggatgcggtacgt
aagcgtccgggtatgtacatcggcgatacagacgatggcaccggtttgcaccacatggtc
tttgaggtggtggacaactccattgatgaagcgttggcgggtcactgtaaagacatcatt
gtgacgattcatgaggataactcggtatccgttagcgacgatggtcgtggtatcccaacg
gaaatgcacccagaagaaaatgtatctgcggctgaagtaatcatgacggttcttcacgct
ggtggtaagtttgacgacaactcatacaaagtatcaggcggtcttcacggggtaggtgtt
tcggtagtaaatgccctgtctaagcaggtcacgcttaccatccaccgcggcggccaaatt
catactcaaacttaccaccacggtgagccacaagcgccattgtcagtgattggtgatacc
gataaaacaggtactcaaatccgtttctggccaagtgaagacactttctctaatgtggaa
tttcactacgacatcctggcgaaacgtctgcgtgagctttcgttcctgaactcgggtgtt
tccatcaaactggttgatgagcgtgaagaagacaagaatgaccacttcatgtttgaaggt
ggtattcaagcctttgttgagcatctaaacaccaacaaaacgccgatcattcaaaagatt
ttccactttgactctgagcgcgaagacggcatcaccgttgaagttgcgatgcaatggaac
gacggtttccaggaaaacatctactgttttactaacaacatccctcagcgcgatggcggt
actcaccttgcaggtttccgtgcagcgctgactcgtacactaaacagtttcatggataaa
gaagggttttcgaagaaggccaaagcagcgacgtccggtgatgatgctcgtgaaggtctg
acggcggttatctcggtgaaagtgccggatcctaagttctcaagccagaccaaagacaag
ctagtgtcttcagaagtgaagtcagcggtagaatctgcaatgggcgagaaactgcaagag
ttcctcgttgaaaacccgaacgaagcgaaaaccgtctgttccaaaatcatcgatgcagct
cgtgctcgtgaagcggcgcgtaaagcacgtgaaatgacacgtcgtaaaggagcactagac
cttgcggggcttccaggtaaactggcggattgccaagagaaagacccagcactctctgaa
ctctatattgtggagggtgactctgcgggcggtagtgccaagcagggtcgtaaccgtaag
aaccaagccatcttgccactgaaaggtaagattctaaacgttgaaaaagctcgcttcgac
aagatgctgtcttcacaagaagtcgcaacgctgatcacagcattgggttgtggtatcggt
cgagacgagtacaacccagacaaattgcgttaccacaacatcatcatcatgaccgatgcc
gacgttgatggttcgcacatccgtacgcttcttttgaccttcttctaccgtcaaatgcca
gagcttattgagcgcggctacgtgtacatcgctcagccaccgctttacaaagtgaagaaa
ggtaagcaagagcagtacattaaagacgaagacgcaatgagccaataccaagtgtcattg
gcattggataacgctgcactacacgttaatgccgaagcgccagctctggcgggtgaagca
ctagagaaactggttcagcaatacaatgcgggcatgaagctggtggagcgcatgagtcgc
cgttacccacattcgttgatgcatgagtttatttatgtacctcgtatcactgcagagcag
tgtcaagacaccgccgcggttgaagtctggggtaaacagctagttgaccagctgaatgcc
aaagaagtaggggcaagccagtacagtctggaaattgagaaacacgaagagttgggtgtt
agcttaccaaaagtagtgatccgcactcatggtgtgactcatgagcatgtattgagtgtt
gatctgttcaactcaaaagaatacggcaagctagcggatctgtctgaagcactggatggt
ctgatcgaagacggtgcctacatcaagcgtggtgaacgtactcagccaatttcaaacttt
gtcgaagcgctagaatggctattcaaagagtctcgtcgtggtttgagcctacagcgatac
aaaggtctgggagagatgaaccctgatcagctttgggaaaccaccatggacccagaaact
cgtcgtatgatgcaagtaactattgaagatgccgttggtgcagaccagctgttcaccaca
ttgatgggtgatcaggttgagccgcgtcgtaacttcattgaagagaatgcgctaaaagta
gccaacctggacgtttag
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