Vibrio nigripulchritudo: VIBNI_A0240
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Entry
VIBNI_A0240 CDS
T02871
Symbol
carB
Name
(GenBank) Carbamoyl-phosphate synthase large chain
KO
K01955
carbamoyl-phosphate synthase large subunit [EC:
6.3.5.5
]
Organism
vni
Vibrio nigripulchritudo
Pathway
vni00220
Arginine biosynthesis
vni00240
Pyrimidine metabolism
vni00250
Alanine, aspartate and glutamate metabolism
vni01100
Metabolic pathways
vni01110
Biosynthesis of secondary metabolites
vni01240
Biosynthesis of cofactors
Module
vni_M00051
De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP
Brite
KEGG Orthology (KO) [BR:
vni00001
]
09100 Metabolism
09104 Nucleotide metabolism
00240 Pyrimidine metabolism
VIBNI_A0240 (carB)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
VIBNI_A0240 (carB)
00220 Arginine biosynthesis
VIBNI_A0240 (carB)
Enzymes [BR:
vni01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.5 Carbon-nitrogen ligases with glutamine as amido-N-donor
6.3.5.5 carbamoyl-phosphate synthase (glutamine-hydrolysing)
VIBNI_A0240 (carB)
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Gene cluster
GFIT
Motif
Pfam:
CPSase_L_D2
CPSase_L_D1
CPSase_L_D3
MGS
ATP-grasp
ATP-grasp_3
Dala_Dala_lig_C
ATPgrasp_Ter
ATP-grasp_4
CoA_binding_2
Epimerase
GSH-S_ATP
Motif
Other DBs
NCBI-ProteinID:
CCO56444
UniProt:
U4K1D1
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All DBs
Position
1:248173..251403
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AA seq
1076 aa
AA seq
DB search
MPKRTDLQSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM
ADATYIEPIQWEVVRKIIEKERPDAVLPTMGGQTALNCALDLEKHGVLAEFGVEMIGATA
DAIDKAEDRSRFDKAMKSIGLECPRADTAKTMEEAYKVLDMVGFPCIIRPSFTMGGTGGG
IAYNKEEFEEICRRGLDLSPTNELLIDESLIGWKEYEMEVVRDKADNCIIVCSIENFDPM
GIHTGDSITVAPAQTLTDKEYQLMRNASLAVLREIGVETGGSNVQFGINPKDGRMVIIEM
NPRVSRSSALASKATGFPIAKIAAKLAVGFTLDELQNDITGGATPASFEPTIDYVVTKIP
RFNFEKFAGANDRLTTQMKSVGEVMAIGRNQQESLQKALRGLEVGVNGFDEMVDLDSPDA
LSKIRHELKEAGAERIWYVADAFRAGLSVDGVFNLTQIDRWFLVQIEELVNLENEVKAGG
FAGLTQEILSKMKRKGFSDARLSTLLGVSESEIRRLRDQYDIHPVYKRVDTCAAEFSSDT
AYMYSSYDDECEAQPTDKDKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNC
NPETVSTDYDTSDRLYFEPVTLEDVLSIVRVEKPKGVIVQYGGQTPLKLARALEAAGVPI
IGTSPDAIDRAEDRERFQAAVDRLGLLQPENATVTTIDQAVEKSKEIGFPLVVRPSYVLG
GRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDIDAICDGERVVIGGIMEH
IEQAGVHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRGLMNTQFAVKDNEVYLIE
VNPRAARTVPFVSKATGAPLAKIAARVMAGQSLESQGFTKEIIPPYYSVKEVVLPFNKFP
GVDPLLGPEMRSTGEVMGVGATFAEAYSKAELGCGNVYPEGGRALLSVREGDKQRVVDLA
SKLTKLGYQLDATHGTAVILGEAGINPRLVNKVHEGRPHILDRIKNNEYTYIVNTAAGRQ
AIEDSKVLRRGALAEKVNYTTTLNAAFATCMAHTADAKTNVTSVQELHAKVKESLA
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaacgtactgacttacaaagtattctaattctgggcgctggtcctattgttatc
ggtcaagcgtgtgagtttgactattctggtgctcaagcgtgtaaagcacttcgcgaagaa
ggctaccgcgtcattctggtgaactctaacccagccaccatcatgactgacccagaaatg
gcagatgcgacttacatcgagccaatccaatgggaagtggttcgtaaaatcattgaaaaa
gagcgccctgatgcggttctaccgacaatgggtggtcagactgcactgaactgtgcactg
gatcttgagaagcacggtgtgcttgctgagtttggtgtagagatgatcggtgcaacggct
gacgctatcgacaaagcagaagatcgttctcgtttcgataaggcgatgaagtctatcggt
cttgagtgtccacgcgcagacactgcaaaaaccatggaagaggcttacaaagtactcgat
atggttggcttcccttgtattatccgcccttcattcaccatgggtggtacaggcggcggt
atcgcatacaacaaagaagaattcgaagaaatctgtcgtcgtggtctggacttgtctcca
accaacgaacttctgattgacgaatctctgatcggttggaaagagtacgagatggaagtg
gttcgtgacaaagcggacaactgtatcatcgtatgttcaatcgaaaacttcgacccaatg
ggtattcacaccggtgactcaatcactgtcgcgccagcacaaacgctgacggacaaagaa
taccagctaatgcgtaatgcctctctggcggtactgcgtgaaatcggtgttgaaacgggt
ggttcaaacgtacagtttggtattaacccgaaagatggccgtatggttatcatcgagatg
aacccacgtgtatctcgttcatctgctcttgcgtcgaaggcaacaggtttcccaatcgcg
aagattgcagcgaaactggcggttggcttcactcttgatgagcttcagaacgacatcact
ggtggcgcaacacctgcatctttcgaaccaaccatcgactacgtagtgactaagattcct
cgctttaacttcgagaaatttgctggcgcgaacgaccgtctgacgactcagatgaagtcc
gtgggcgaggtgatggcgattggtcgtaaccaacaagaatcactgcaaaaagcattgcgc
ggtctagaagttggcgtgaacggttttgatgaaatggtggatctggactctcctgatgca
ctatctaaaatccgccacgagcttaaagaagcgggcgctgagcgtatctggtatgtagct
gatgcattccgtgccggtctgtctgttgacggcgtattcaacctgactcaaattgaccgt
tggttcctggttcaaatcgaagagctagttaacctagaaaacgaagtgaaagctggtggc
tttgcaggtctgactcaagaaatcctaagcaagatgaagcgcaaaggcttctctgatgct
cgcctatctacgctactaggtgtttctgaaagcgaaatccgtcgtctgcgtgaccagtat
gatatccaccctgtttacaagcgtgtggatacctgtgcagcggaattctcttctgataca
gcttacatgtactcctcatacgatgacgagtgtgaagcgcagccaacagataaagacaag
atcatggtattgggcggtggtccaaaccgtatcggccaaggtatcgagttcgactactgc
tgtgtacacgcatcactagcactgcgcgaagacggttacgagaccatcatggtgaactgt
aacccagagacagtttctacagactacgacacatcagaccgtctgtacttcgaacctgtt
actcttgaagatgtactttctatcgttcgcgttgagaagccaaaaggcgttatcgtgcag
tacggtggtcagactcctctgaaactggctcgtgctcttgaagcagcaggagtgccaatc
atcggtactagccctgatgcaattgaccgcgcagaagaccgtgagcgtttccaggcagca
gttgaccgcctaggtctgctacaaccagaaaacgcaacagtaactacgattgaccaagcg
gttgagaaatcaaaagaaatcggtttcccactggttgtacgtccttcttacgtattgggt
ggtcgtgcgatggaaatcgtatacgacgagcaagacctgcgccgttacttcaacgaagct
gtgagcgtatctaacgaatccccagtacttctggaccgcttcctagatgacgcaacagaa
gtggatatcgatgctatctgtgacggtgaacgcgtcgttatcggcggtatcatggagcac
atcgagcaagcgggtgttcactcaggtgactcagcatgttcgcttcctgcttacacgcta
agccaggaaatccaggacaagatgcgtgagcaagttgaaaagctggcgttcgaactgggt
gtacgtggtctgatgaacacgcagtttgcggttaaagacaacgaagtttacctaatcgaa
gtgaatccacgtgctgcacgtactgtaccattcgtatcgaaagcaacgggtgcaccacta
gcgaaaatcgctgcacgtgttatggcaggtcagtctcttgagtcgcaaggctttaccaaa
gagatcattcctccatactactcagtgaaagaagtggttctgccattcaacaagttcccg
ggtgttgacccactgcttggtcctgaaatgcgctcaactggtgaagttatgggtgttggt
gcaacattcgcagaagcctactctaaagcagagctaggctgtggcaatgtttacccagaa
ggtggtcgtgcgctactgtctgttcgtgaaggcgacaagcagcgtgttgtagaccttgcg
tctaagctgaccaagctgggttaccaactggacgcgactcacggtacagcagttatcctt
ggtgaagcgggtatcaacccacgcctggtaaacaaggtacacgaaggtcgtccgcacatt
cttgaccgcattaagaacaacgaatacacctacatcgttaacacggctgcgggtcgtcag
gcgattgaagattcgaaggttctgcgtcgtggtgctctagctgagaaagtgaactacaca
acaacgctaaacgcagcgtttgcaacttgtatggctcacactgcagatgcgaaaaccaac
gttacctcggttcaagaactgcacgcgaaagtaaaagaaagcctagcttaa
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