Vibrio nigripulchritudo: VIBNI_A0312
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Entry
VIBNI_A0312 CDS
T02871
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase srmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
vni
Vibrio nigripulchritudo
Brite
KEGG Orthology (KO) [BR:
vni00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vni03009
]
VIBNI_A0312 (srmB)
Enzymes [BR:
vni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VIBNI_A0312 (srmB)
Ribosome biogenesis [BR:
vni03009
]
Prokaryotic type
rRNA helicases
VIBNI_A0312 (srmB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_C_2
AAA_30
AAA_11
Motif
Other DBs
NCBI-ProteinID:
CCO56514
UniProt:
U4K1J8
LinkDB
All DBs
Position
1:complement(336916..338145)
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AA seq
409 aa
AA seq
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MIRTFAELELDPNLLEAIEEMGYERPTQIQAEAIPQALDGRDVLASAPTGTGKTAAFIIP
ALQYLQDFPRRKAGPARILILTPTRELAMQVADQARALAKYTNLKIFTITGGVQYQEHAD
ILSTTQDIVVATPGRLMEYIEAERFDCRAIEWLVLDEADRMLDMGFGPTVDRLSAECRWR
KQSMLFSATLEGRGVEGFTADLLKNPAELDAEPSRRERKKITQWYHRADSMEHKYQLLKH
VVTEQAERSIVFLKTRDRLADLRSKLESDQITCAWIQGEMPQDRRNNAIRRFREGEVNVL
LATDVAARGIDLPDVSHVINFDMPRTADVYLHRIGRTARAGKKGNALSIVEAHDQPMLDR
VARYTKEDIKERFIEGMRPQHKKPVFKKKNKKKEAKKADKKKSAKKKKK
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
gtgatcagaacttttgctgaactcgaactcgatccaaatctgttggaagccattgaagag
atgggatacgaacgcccaactcaaattcaggctgaagcaattccgcaagcactggatggt
cgcgatgtcctcgcgtcagcccctaccggaactggtaaaaccgccgctttcatcattcct
gcactgcaatatctgcaagattttccacgccgtaaagcgggacctgcacgtattctgatc
ctgacaccaacccgtgaactggcgatgcaggttgcagatcaagcaagagctctggcgaag
tacacaaacctgaagatcttcaccattactggcggggttcagtatcaggagcacgcggat
attctatccaccacgcaagatatcgtggtcgcgacgccgggtcgtttgatggaatacatt
gaagcggagcgttttgactgccgcgctattgaatggctggtactggatgaagcggatcgc
atgctggatatgggttttggcccgacagttgaccgcttatccgcagagtgtcgctggcgt
aaacagtcgatgttgttctcagcaacgcttgaaggtcgtggtgtggaaggcttcaccgcg
gatcttttgaaaaatccagccgagctggatgcagaaccttctcgccgcgaacgcaaaaaa
atcactcagtggtatcaccgcgccgactccatggagcacaaatatcagcttcttaagcat
gtggtaaccgaacaggcggaacgttccattgtattcttaaagacacgcgatcgtctggcg
gacctgcgttctaagttagaaagtgatcaaattacctgtgcgtggattcagggagaaatg
ccgcaagatcgccgtaacaacgccattcgtcgtttccgcgaaggtgaagtgaacgtcctg
ctggcaaccgacgtggccgctcgtggtatcgatttgccagacgtatctcatgtcatcaac
ttcgacatgcctcgaactgccgatgtttacctgcaccgaattggtcgaaccgctcgtgct
ggtaaaaaaggaaatgcgttgtctatcgttgaggcgcacgaccagccgatgctggatcgc
gtcgctcgttacaccaaagaagacatcaaagagcgtttcattgaaggcatgagaccacag
cacaaaaagccagtgttcaagaaaaagaacaagaagaaagaagcgaagaaagccgacaag
aaaaaaagcgctaagaaaaagaagaagtaa
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