Vibrio nigripulchritudo: VIBNI_A0500
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Entry
VIBNI_A0500 CDS
T02871
Symbol
radA
Name
(GenBank) DNA repair protein radA
KO
K04485
DNA repair protein RadA/Sms
Organism
vni
Vibrio nigripulchritudo
Brite
KEGG Orthology (KO) [BR:
vni00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vni03400
]
VIBNI_A0500 (radA)
DNA repair and recombination proteins [BR:
vni03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
VIBNI_A0500 (radA)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATPase
AAA_25
Zn_ribbon_LapB
ChlI
Lon_C
DnaB_C
GvpD_P-loop
Rad51
RecA
AAA
SLFN-g3_helicase
ABC_tran
AAA_22
AAA_16
Zn_ribbon_Thio2
AAA_29
AAA_14
NTPase_1
AAA_24
Zeta_toxin
Viral_helicase1
DUF7125
Zn_ribbon_8
AAA_5
nSTAND3
DZR
zinc_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
CCO56690
UniProt:
U4JV05
LinkDB
All DBs
Position
1:545832..547211
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AA seq
459 aa
AA seq
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MAKAKRAYVCNDCGADFPRWQGQCSACGAWNTISEIRLAASPTVARNERLSGYAGSATES
KVQKLSEIDLQEVPRFSSGFKELDRVLGGGVVPGAAILIGGNPGAGKSTLLLQTMCLLSG
QMPTLYVTGEESLQQVAMRASRLGLPKDNLSMLSETNVDKICQIAEKEQPRIMVIDSIQV
MHVADVQSSPGSVAQVRESATALTRYAKQNNVAVFIVGHVTKDGTLAGPKVLEHIIDCSV
LLDGGTDSRFRTLRSHKNRFGAVNELGVFAMTGQGLKEVSNPSAIFLSRGEEETSGSSVM
VVWEGTRPLLVEIQALVDYSQLANPRRVAVGLEQNRLSLLLAVLHKHGGLQMADQDVFVN
VVGGVKVTETSADLALLMALLSSFRDRPLPKDVVVFGEVGLAGEIRPVPSGQERLMEAFK
HGFTKAIVPAANMPKGGIKGMQIHGVQKLSEAIEAFDEL
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaagcaaaacgtgcatatgtatgtaatgattgtggtgcagatttcccccgctgg
caagggcagtgcagtgcatgtggggcatggaacaccatctcggaaattcgtcttgccgca
tcgccaaccgtagctcgaaacgaacgtttatcagggtatgcaggttctgcaaccgagtcc
aaggttcagaaactctctgaaattgacctgcaggaagtaccaaggttcagtagcggtttc
aaagagttagaccgtgttcttggaggcggagttgttcccggagccgccattctgattggt
ggtaacccaggggccggtaaatcaacacttcttttacaaaccatgtgtttgctgtctggt
cagatgccgactttgtatgtcaccggtgaagagtcattgcagcaggtggcgatgcgtgct
tcccgccttggattaccgaaagacaacctcagcatgctgtcggaaaccaatgtcgacaaa
atttgccagattgcggaaaaagagcaaccccgcatcatggtgatcgactctattcaggtt
atgcacgttgcagacgtgcaatcttcaccaggaagcgtggctcaggttcgtgaatccgca
accgcgttgacccgctacgcaaaacaaaacaacgtcgcggtgttcattgttggtcacgta
accaaagatggcacgctcgcgggacctaaagttctggaacacattatcgactgttcggtg
ctgctggacggcggtacagatagtcgtttccgcactttgcgtagccacaaaaaccgtttt
ggcgcggtgaatgagctgggggtatttgcgatgacagggcaggggctgaaagaagtcagc
aacccttcggcgattttcctgtctcgtggtgaagaagaaacctcgggcagctcagtgatg
gtggtgtgggaagggacccgacctttgctcgttgaaattcaggcgctggtggattattcc
cagttagcgaaccctcgccgtgtagcagtgggtttagagcagaaccgtctgtctttgctc
ttggctgttttgcacaaacatggcggtttacaaatggccgatcaggatgtttttgtgaat
gtggtgggcggcgtaaaagtaacagaaaccagtgccgacttagctctgcttatggcgctg
ttgtccagtttccgtgatcgcccgttgccaaaagatgtggtggtgtttggggaagtcggt
ctggcaggggaaattcgccctgtgccaagtggtcaggagcgattgatggaagcctttaag
catggattcaccaaagcgattgtccctgcggcaaacatgccaaaagggggcataaaaggc
atgcagatacatggtgtccaaaagctctcggaagccattgaagctttcgacgagctatag
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