Vibrio nigripulchritudo: VIBNI_A0545
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Entry
VIBNI_A0545 CDS
T02871
Symbol
recC
Name
(GenBank) Exodeoxyribonuclease V gamma chain
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
vni
Vibrio nigripulchritudo
Pathway
vni03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vni00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
VIBNI_A0545 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vni03400
]
VIBNI_A0545 (recC)
Enzymes [BR:
vni01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
VIBNI_A0545 (recC)
DNA repair and recombination proteins [BR:
vni03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VIBNI_A0545 (recC)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
CCO56733
UniProt:
U4KD59
LinkDB
All DBs
Position
1:595228..598689
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AA seq
1153 aa
AA seq
DB search
MFTVYHSNQIELLKSLLVELIKLSPLENPFEAEQILVQSPGMSQWLKMELAKEFGVAANI
DFPLPATFIWECFTHVLPDVPSRSAFNKEAMTWKLMDILPTLLDKPDFSALNRYLEGDED
HAKLFQLSEKIADIFDGYLVYRPEWIATWESGEAVSEIGEEHPWQPILWQALYDKTVSLG
QSPYHRANLYEHFIDALAHTTPNLDELPKRLFVFGISSLPPRYMDALKALGEHIDVHLMF
TNPCRYYWGEVRDRKYLAKLAARHRKHVEWKQDHSEAHGVSEQLKGDVDDNVIDELHTDV
VGNSLLASMGKLGRDNMYLLSQLEAHEVEAFVDVDRDSILHQLQADILNLEEHQKDDELE
TSEHKQVVQLGDKSLSVHACHSPMREVEVLHDQLLAMFDADPNLKPRDIIVMVADINAYS
PAIQAVFGNAPGERFIPYSISDRTAQEESPVLNAFMQLMLLPDSRFQASEMLELLEVPAI
MARFGINEDQFERAKIWIEEIGVRWGLDEQTAGQFELPQLNQNTWLFGIQRMLLGYAMPE
SAGLFEGERTIAAYNEVQGMDAELAGKLAHYVDTLNQFQRQLNATQSAQHWHRIINDMLD
AFFSVELEGEMALKSIRDTMSQLLEQLSDAGYQETLSHTVLQQYLHNKLSGTRVSQRFLA
GQVNFCTLMPMRSIPFKLVCLLGMNDGAYPRSMPPEGFDLMNNRARPGDRSRRDDDRYLF
LEALLSAQQSLYISYVGRSIQDNTEKVPSVLVSELLEYCHQNYCLEDDLSLGVDASGDKL
LDSLIHVHPMVPFSPDAFSGEDKSYAKEWLPSVNRLGARSGAFEQPLDDYLTEMTAPYQL
DLVELQRFWRLPVQYFFNRRLKVFFEPPMATMENDEPFTLGGLQSYKMRDELVDTLLQCR
LNGEPEEPVLHRYMEQQRAKGLLPVGAFGELEFAANREQTDAMVNVLYPLTGKPLEDSEV
RLELSVEGEPCELTGWLTQRYQSGLLRYRSGKIRAQDWLAAWIDHLCLAAMGQSSRTHLI
GYDKKEGVVHWVISPMAGSIEDNASRAKMMLQELVRLFYQGMNQPLAYFPKTALAGVQAC
INKAGEWVDDEDAAFKKMADAFNDGYLFPGEGSDRYIQRIWSSWDDDLGKAIRLNASLVL
QAAVLATHDAEEG
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
gtgtttactgtctaccattccaaccagattgaattgcttaaatccttgctggttgagctc
ataaaactgtccccattagaaaacccatttgaagcagaacaaatcctggtacaaagcccg
ggtatgtcccaatggctgaaaatggaactggctaaagagtttggtgtagcagcaaacatc
gattttcctctgccagcgactttcatttgggaatgcttcacgcatgtgttgccagacgtg
ccttcgcgcagtgcgtttaacaaagaagccatgacgtggaaattgatggacattcttcca
actctgctcgataagcccgatttctcggcgctgaaccgttatctggaaggggatgaagac
cacgctaagcttttccagctttcggaaaagattgccgacatttttgacggctatttagtg
tatcgaccagagtggattgccacatgggagtccggtgaagcggtctccgagattggtgaa
gagcacccgtggcagccgattttatggcaagcgctgtacgacaaaaccgtatcgctgggt
cagtcaccgtatcaccgggcgaacctctacgagcactttatcgacgctctggcacacaca
acaccaaatttggatgagctgccaaagcgcctgtttgtatttggtatttcatcactgcca
cctcgctatatggacgcgctcaaagcacttggcgagcacattgatgtccacctgatgttc
actaacccatgccgatactactggggagaagtgcgagacagaaagtacctcgccaagttg
gcggctcgccatcgtaaacacgtggagtggaaacaagaccattcagaagcacacggtgta
tcagagcagctcaaaggcgacgttgatgataatgtgattgatgaactgcacaccgacgtg
gtgggcaacagtttattggcttcgatgggaaaactagggcgagacaacatgtatttactg
tctcagctagaagcccatgaagtggaagcctttgtcgatgtagaccgcgacagcattctg
catcagcttcaggcagacattcttaacttagaagaacatcagaaagacgacgagttagag
accagcgagcacaagcaagtggttcagctaggggataagtctctgtctgtacacgcctgc
catagcccgatgcgcgaagtggaagtgttgcacgaccaactgctcgcgatgttcgatgcc
gatcctaacctcaaacctcgcgacatcattgttatggtggcggacatcaatgcgtacagc
ccagccattcaggcagtgtttggtaacgcgccgggtgaacgtttcattccctattcgatt
tccgaccgaaccgcgcaggaagaaagcccggtactcaatgccttcatgcaattgatgctg
ttgccagacagccgattccaagcctcagaaatgctggaactgcttgaagtaccagccatt
atggcgcgtttcgggataaacgaagaccagtttgagcgcgccaaaatctggattgaagaa
atcggcgttcgctgggggctggacgaacaaaccgctgggcagtttgagctgcctcaactg
aatcaaaacacttggctgtttggtattcagagaatgctcttgggttacgccatgccagag
agtgcgggtctgttcgagggtgagcgcaccatcgccgcctacaatgaagttcaggggatg
gatgcagagttggctgggaagctggcgcattatgttgataccctgaatcaattccagcgt
cagcttaatgccacacaaagcgcacagcactggcatcgcatcattaacgacatgttagac
gccttctttagcgtagagctggaaggggaaatggcactgaagtcgattcgggatacgatg
tcgcagttgcttgagcagctgagcgatgctggctaccaagagacgctgtcacatacggta
ttgcagcaatacctgcacaacaaactgtcgggcacccgagtcagccagcgttttctggct
gggcaagtgaacttctgtaccctgatgccgatgcgttctattccgtttaagttggtgtgt
ctgcttggcatgaatgacggggcttacccgcgctctatgccgccggaaggtttcgacttg
atgaacaaccgagcgagaccgggtgaccgttcccgccgtgacgacgatcgttatctgttc
ctcgaagccttactgtctgcgcagcagtctttgtacatcagctatgttgggcgatccatt
caggacaacacagaaaaagtgccttctgtgctggtttctgagttgctcgaatactgccac
cagaactactgtcttgaagacgatctgtctcttggggtggatgcctcaggcgacaaactt
ttagactctctcattcacgttcaccccatggtgccgttcagcccagatgcatttagtgga
gaagacaaaagctacgccaaagagtggttgcccagtgtaaaccgcctcggcgcaagatca
ggggcgtttgagcagccattggacgattacctaactgaaatgacggcgccttatcagttg
gatcttgtcgagctccaacgcttctggcgtctgcccgttcagtacttctttaatcgtcgc
ctgaaagtcttctttgaaccaccaatggcaacaatggaaaacgacgaaccgtttaccttg
gggggattgcagagctataagatgcgcgacgagctggtcgatactttgctccaatgccgc
ttaaacggtgagccagaagagcccgtattgcatcgctatatggagcagcaacgcgccaaa
ggtttactgccagtaggagcgtttggtgagctcgaatttgctgccaatcgggaacaaacc
gacgccatggtcaatgtgctttacccgttaactggaaagccattggaagacagtgaagtt
cgtcttgaactgagtgtagagggagaaccttgtgaacttacaggctggctaactcagcgc
tatcagtctggtttacttcgctatcgtagtggaaaaattcgtgcgcaagactggctagcc
gcctggattgatcacctttgtttggcagcaatggggcaaagcagtcgaactcacctcatt
ggctatgacaaaaaagagggcgtggtgcactgggtcatctcaccgatggcaggttcaatt
gaagacaatgccagtcgagccaagatgatgcttcaagagttggtgaggctgttttatcaa
ggaatgaatcagccgctggcttacttccccaaaaccgcattggcaggtgttcaggcatgc
atcaataaagcgggcgagtgggttgatgatgaagacgctgcgttcaagaaaatggcagat
gcctttaacgatggttatttgttcccaggtgaaggttcagaccgatatatacaacgtatc
tggtcttcatgggatgacgatctaggaaaagcgatccggttaaatgcgagtttagtatta
caagccgcagtattagccacgcatgatgcggaagaagggtaa
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