Vibrio nigripulchritudo: VIBNI_A0547
Help
Entry
VIBNI_A0547 CDS
T02871
Symbol
recD
Name
(GenBank) Exodeoxyribonuclease V subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
vni
Vibrio nigripulchritudo
Pathway
vni03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vni00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
VIBNI_A0547 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vni03400
]
VIBNI_A0547 (recD)
Enzymes [BR:
vni01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
VIBNI_A0547 (recD)
DNA repair and recombination proteins [BR:
vni03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VIBNI_A0547 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
SH3_13
Viral_helicase1
Helicase_RecD
AAA_11
AAA_22
UvrD-helicase
SLFN-g3_helicase
nSTAND3
AAA_16
CbiA
DEAD
Peptidase_C21
NTPase_1
AAA_28
TrwB_AAD_bind
AAA_13
UvrD_C
MobB
T2SSE
SRP54
MeaB
NPHP3_N
AAA
ResIII
DUF87
Motif
Other DBs
NCBI-ProteinID:
CCO56735
UniProt:
U4JV48
LinkDB
All DBs
Position
1:602546..604609
Genome browser
AA seq
687 aa
AA seq
DB search
MLKLLQQLTDQGIVRQLDYQFAQFIASQQPENGENIPFLAGLVSAELGKGHICIPMDKVD
LVTCLGLYGEQAETLRNQFSGIDWQSELHASSLVGKPGEAKPLILDGANLYLHRYWHYET
SLSHTLKNLMSPIPLSNDQINRLKITLDHLFARSYHYLFSAVTKADQSSQVQRQQWVCDH
LDVVDSNSLNWEAIDKVITQANKVTDLEALNDLVPQSACLNWQKVAAAVALTRRFAVISG
GPGTGKTTTVTKLLAALVQQGSDIGEVPTIKLVAPTGKAAARLTESIGKAVDALPVEPEI
RARIPTESSTIHRLLGAIPGRAEFRHHSDNPLHLDILVVDEASMVDLSMMHKLVQALPPQ
ARLILLGDKDQLASVEAGAVLGDICDFSDQHMSVTQSQQISALTGFSAIAQHVSTQAPAI
VDCLCMLQKSYRFDARSGIGQLAKAINSGQPIQVEKVWNQGFEDIAHHDLDKAVYQTMLN
MAAKGYDNYLQAVTRPLNHDETPSLKAREVLKLFSQCRLLCAIREGDFGVTGLNTRIEQL
LRKKGKLPATDELWYPGRPVMVTRNDHSLGLYNGDIGVCMLDESEETPRLRVYFELPDGT
VKGVLPSRVPEHETAYAMTIHKSQGSEFEHTIMVLPPNYSPILTRELIYTGITRAKKQLD
LFGDRAVMSRGVKVKTLRASGLASRLG
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgcttaaactattacaacaactgaccgatcaaggcattgtaaggcaattggattatcag
tttgctcagtttattgcgtctcagcagccagaaaacggtgagaacatcccctttctggcg
gggctggtcagcgccgagttaggcaaagggcacatctgtatcccaatggacaaagtcgat
ttggtgacctgcttggggctgtatggtgagcaagcggaaacccttcgtaaccagttttcg
ggtattgactggcagtctgaattgcacgcttcttctttggtgggaaaaccgggtgaggcg
aaaccgttaatccttgatggcgcgaatctgtatttgcatcgctattggcactatgagacc
tcacttagccatacattaaaaaacctgatgagcccgatcccgctttctaatgatcagatt
aatcgcttgaaaatcacactagatcatctgtttgcgcgcagttaccactacctgttcagt
gcggtgaccaaagccgatcaaagttcgcaggtacagaggcaacaatgggtttgcgatcat
ctggatgtagtggattccaattccttaaattgggaggcgatagataaggtaattacccag
gcgaataaggttaccgacttagaagctctgaatgatttggtgcctcagtcggcgtgcttg
aactggcagaaagtggcagcagcggtggcattaacccgtcgctttgcggtgatttcaggt
ggaccgggtactggtaaaactacaacagtgactaaacttttggcggcgttggtccagcaa
ggttcagatattggtgaagtgcccaccataaaactggttgcgccaaccggaaaggcggcg
gctcgtttgactgaatcgattggtaaagcggtcgatgccttgccagtcgaaccagaaatc
cgagcccgaattcccactgagtccagcaccattcaccgcttgctgggggcaatccccggg
cgcgcagaatttcgtcatcacagtgataaccctcttcatttggatattctggtggtcgat
gaagcctcgatggtcgacctatccatgatgcataaattggtgcaagctttgccaccgcag
gcaagattgattttgctaggcgataaagaccagctcgcatcggtagaggcgggggccgtt
ctgggcgacatctgtgatttcagtgatcaacatatgagcgtgactcaaagccagcagata
tcggcactgactggtttttcggcgatagcacaacacgtatccactcaagccccagcgatt
gtcgattgcttgtgtatgctgcaaaaaagctatcgattcgatgctcgttcgggcattggg
caactggcgaaagccataaattcagggcagccgatccaagttgaaaaagtgtggaaccaa
gggtttgaagacatcgcgcatcatgacttggataaagcggtctaccaaacgatgttaaat
atggccgccaagggttacgacaattatctccaagctgtcacaagaccgttgaaccacgat
gaaacgccttcgttgaaagccagagaggttttgaagctgttttcccaatgtcgattgctt
tgcgcgatacgtgaaggggattttggtgtaacagggttaaatacacgcattgagcaactc
ttgagaaagaaaggaaaattgcctgccactgacgagctttggtatcccggacgcccagtt
atggtgactcggaatgatcacagcttagggctgtataacggtgacatcggtgtgtgtatg
ttggacgagtcggaagaaacgccaagactaagggtatattttgagttaccggatggcacg
gtgaaaggcgtacttccaagccgtgttcccgaacacgaaaccgcctatgcgatgacgatt
cacaaatctcagggaagtgagttcgagcataccatcatggtattgccacccaattacagc
ccaattcttacccgcgagttgatttataccggaattacgcgtgctaagaagcagttagat
ctgtttggtgatcgtgcggtaatgagtcgtggagtgaaggtaaaaacgttgagagcgagt
gggttagcgagtcgattgggttag
DBGET
integrated database retrieval system
