Vibrio nigripulchritudo: VIBNI_A0815
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Entry
VIBNI_A0815 CDS
T02871
Symbol
dnaX
Name
(GenBank) DNA polymerase III subunits gamma and tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
vni
Vibrio nigripulchritudo
Pathway
vni03030
DNA replication
vni03430
Mismatch repair
vni03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vni00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VIBNI_A0815 (dnaX)
03430 Mismatch repair
VIBNI_A0815 (dnaX)
03440 Homologous recombination
VIBNI_A0815 (dnaX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vni03032
]
VIBNI_A0815 (dnaX)
03400 DNA repair and recombination proteins [BR:
vni03400
]
VIBNI_A0815 (dnaX)
Enzymes [BR:
vni01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VIBNI_A0815 (dnaX)
DNA replication proteins [BR:
vni03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VIBNI_A0815 (dnaX)
DNA repair and recombination proteins [BR:
vni03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VIBNI_A0815 (dnaX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_tau_5
DNA_pol3_delta2
DNA_pol3_gamma3
DNAX_ATPase_lid
DNA_pol3_tau_4
AAA
RuvB_N
AAA_22
AAA_5
AAA_14
AAA_16
MgtE_N
AAA_2
AAA_18
AAA_19
ResIII
TsaE
PIF1
nSTAND3
SKI
Motif
Other DBs
NCBI-ProteinID:
CCO56984
UniProt:
U4K2V4
LinkDB
All DBs
Position
1:870722..872986
Genome browser
AA seq
754 aa
AA seq
DB search
MSYLALARKWRPQKFNEVVGQSHVLTALENALNQNRLHHAYLFSGTRGVGKTTIGRLFAK
GLNCETGITATPCGECSTCKEIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRF
KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPISV
DNIHQQLDHILAHEQVSAEARAVGMISHAADGSMRDALSLTDQAIALGNGSIDTATVANM
LGTLDTDQAIHLLEAISSHQAQAALNALDHLAQIGVDWDGLLQELATQLHRIAMYQALPA
TLDKAQPDAEKIELLSRALTPEEIQLYYQMVIKGREDLAIAPTPKMGAEMIVLRLIAFRP
ASIQAVPLNAQPATASVPSAKAPVQPAEVKPAASAAPHPSVAQPEASHPPVSPAETAREK
LEAARQNTVQQQQQQQQQQQQQQQQEQAAPQSHSEPIPDYSDMPNYGDIEQDSIPPQYDD
PAYSQPVASEPAPSAPAQQSAAQQPSEPAPQSSASPLSGLRHQLRSKRNPGGQNSKSTSS
SPKKVNAAPAAKKQSAAERIAQFAPAGQVSPASSAAATAEKKEVSNEPYQWKPSKPQVKP
QRTELTPTQIKKALEHTKTPEMAAKLVEESVDADEWSALIQKLDTAKLVEQLALNSSYMK
EGNTIHLTLRASQAHLNTEKAQKDLSDALATALGEPCELIVKIGEDGESPLEIRDKLYQG
KLQQAHESLAEDPHVQFIQARFAAEIDSDSVRPI
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atgagttatttagcgttagcacgtaagtggcgtccgcaaaagtttaatgaagtcgtgggt
caaagccatgtgctgacggcactggaaaatgccttaaatcagaatcgtcttcatcacgct
tatctatttagcggtacgcgtggcgttggtaaaacaacgattggtcgtttgtttgccaaa
gggctaaactgcgaaacaggcattacagcaaccccttgtggggaatgttctacctgtaaa
gaaatcgacgaaggacgattcgttgatctgctagagatagatgccgcatcccgaactaag
gtagaagacacgcgagagttactggataacgttcagtacaaaccggcgcgcggtcgattc
aaagtctacctgatagacgaagttcacatgctgtctcgccacagcttcaatgcgttgctt
aaaacgctggaagagccaccggaatacgtgaagtttctattggcgacgaccgatccgcaa
aagctgccagtaactattctttcacgctgtttgcagttccatctcaaaccgatcagcgtt
gataatatccatcagcagctcgaccatattctggctcatgagcaagtttctgctgaagcg
cgcgcggttgggatgatttcccatgcagcagatggaagtatgcgtgatgcactcagcctc
accgatcaggctattgcgcttggtaacggttcaattgataccgcaaccgttgcgaatatg
ctgggtacactggatactgatcaggcgatccatttgctcgaagccatcagttctcatcag
gcacaggctgctctgaatgcgctggaccaccttgcgcaaattggtgtcgattgggatggt
ttgctacaagaactcgccactcagcttcatcgaattgcgatgtatcaggcattgcctgcc
acactggataaagctcagccagatgctgaaaagattgagttgctatcacgagctctgaca
ccagaagaaatccaactgtattatcaaatggtgattaaaggtcgtgaagatctcgctatt
gcaccgactcctaagatgggtgcggagatgattgtgttgcggttaatcgccttcagacca
gcatccattcaggctgtaccactgaatgcgcagcctgcaacggcatctgtgccaagtgca
aaagcaccagtacaacctgctgaagtgaagcctgcggcatctgcagcgcctcacccgtct
gttgctcaaccagaagcttctcatccccctgtatctcctgcagaaacagcacgtgagaaa
ctggaagcggcgcgacaaaatactgtacagcaacagcaacagcaacagcaacagcaacag
caacagcaacagcaagagcaagcagcgcctcagtctcacagtgagccaataccggattac
agtgatatgccgaattacggagatattgaacaggattcaatccctcctcaatacgatgat
cctgcttactcacaacctgttgcctccgagccagcacctagtgcaccagctcaacaaagc
gctgctcagcagccttcagaaccagctcctcaatcgtcagcaagcccactttcgggtctt
cgacatcaacttcggagcaaacgtaatcctggtggacagaactcgaagtcaacaagcagt
tcgccaaaaaaggttaacgcggcacccgcagcgaaaaaacagtcagcagcagagcgcatc
gctcagtttgcgccggctgggcaggtgtcgccagcaagttcagcggcagccaccgccgag
aaaaaggaagtgtccaatgagccttatcagtggaaaccatccaagcctcaggttaagccg
cagagaaccgaactgacaccgacgcaaattaaaaaagcgctggaacacaccaaaacccct
gaaatggcagctaagctggtagaagagtctgtagatgcagacgaatggtctgccctgatc
caaaagctggatacggcaaaactggttgagcagttagcactcaactcgtcttacatgaaa
gaaggcaacaccattcatctgacattgagggcgtcgcaagcgcacctcaacacagaaaag
gcgcagaaagatttatcagatgcgttggcaacagcgcttggagagccgtgtgagcttatt
gtcaaaattggcgaagacggggaatctccactcgaaatcagagacaaactttatcagggc
aagcttcagcaagcgcatgaaagtttagccgaggatcctcatgttcagtttattcaggct
cgatttgcggcagaaatagacagtgatagcgtgagaccaatctga
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