Vibrio nigripulchritudo: VIBNI_A1557
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Entry
VIBNI_A1557 CDS
T02871
Symbol
dbpA
Name
(GenBank) ATP-independent RNA helicase dbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
vni
Vibrio nigripulchritudo
Brite
KEGG Orthology (KO) [BR:
vni00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vni03009
]
VIBNI_A1557 (dbpA)
Enzymes [BR:
vni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
VIBNI_A1557 (dbpA)
Ribosome biogenesis [BR:
vni03009
]
Prokaryotic type
rRNA helicases
VIBNI_A1557 (dbpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
AAA_19
CMS1
AAA_30
HK97-gp10_like
AAA_22
adh_short
Motif
Other DBs
NCBI-ProteinID:
CCO57677
UniProt:
U4KBF9
LinkDB
All DBs
Position
1:complement(1656718..1658106)
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AA seq
462 aa
AA seq
DB search
MSNTSFKSLGLKPELLTNLDSLGYEEMTPIQAQSLPFVLKGQDVIGQGKTGSGKTATFGL
GLLQNLNVKKFRVQSLVLCPTRELADQVAKEIRKLARAIHNIKVLTLCGGMPMGPQIGSL
EHGAHILVGTPGRILDHLDKGRISLEHLNTLVLDEADRMLDMGFQDALDAIIEQAPTDRQ
TLLFSATFPDSIEAISKRILRKPQRITVESTHDTVSIRQHFYDVAGFEERLEATRRILMQ
DKPESTVIFCNTKRDVDEVADELRYHDFSVIALHGDMEQRQRDQALVQFANKSVSILVAT
DVAARGLDVDNLDAVINFHLARDPEVHVHRIGRTGRAGAKGCAHSFISEKESYKVAQIEE
YFDFDIRTKDLPSEDVLNQRAYYAKMVTLQIDGGKKQKVRPGDILGALTGDDGIPGSQVG
KINVFPMSAYVAVHTESAKKAFKKLEKGKLKGKQFRVRYVKN
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
ttgtctaacacatcatttaaatctttagggttaaaacctgaacttctgaccaaccttgat
tcactgggttatgaggaaatgactccaatacaggcacaaagcctgccttttgttttaaaa
ggtcaggacgtgattgggcagggtaaaacaggctctggtaaaacggcgacatttggtttg
ggtttattgcagaacctgaatgtgaaaaagtttcgcgtacagtcattggttttatgccct
acccgtgaacttgccgaccaagtagcaaaagaaattagaaagttagcgcgagcaattcac
aatattaaggtgttgacgctttgtggtggaatgccaatgggacctcagattggctccctt
gaacacggcgcacatattctggttggtacaccaggtcgtattctggatcacttagataaa
ggtcgaatcagtttagaacaccttaatacgctagtgctggatgaagcggatcgcatgcta
gacatgggattccaggatgcgttggacgccatcatcgaacaagcccctacagacagacaa
actctgctgttcagtgctaccttccctgactccattgaagcgatatccaaacgtattttg
cgaaaaccacagcgaatcaccgtggaatcgacacacgatactgtgagtattcgccagcat
ttttatgacgtagcaggctttgaagaaagactcgaagcgacaagaagaattctaatgcag
gataaacctgagtcgacggtcattttctgtaataccaaacgcgatgtagatgaggtagcg
gatgaacttcgttaccacgatttcagtgttatcgcactgcatggggacatggaacaaaga
cagcgtgatcaggctttggtgcaatttgcgaataaaagcgtatcgatactggttgcaacc
gatgttgccgcccgtgggctggacgtcgacaacttagacgctgtaattaatttccaccta
gcacgcgatccggaagtccatgttcacagaatcgggcgtactggtcgtgctggagcaaaa
ggttgcgcgcattcctttatcagtgaaaaggaatcttacaaagttgctcaaattgaagag
tattttgatttcgacattcgaacaaaagatctaccaagtgaagacgtacttaaccagcgc
gcgtattacgcaaagatggtgacacttcaaattgatggtgggaagaagcaaaaagttcgc
ccgggtgacatattaggcgcgctaactggcgacgacggcatcccggggagtcaggtagga
aaaatcaatgtattccctatgagcgcgtacgttgctgttcatactgaaagtgccaagaaa
gccttcaaaaagcttgagaaaggcaaattaaaaggtaagcagttccgcgtaagatacgtg
aagaactag
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