Vibrio nigripulchritudo: VIBNI_A1817
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Entry
VIBNI_A1817 CDS
T02871
Name
(GenBank) putative RTX toxin and related Ca2+-binding domain fused with VCBS repeat, Cadherin-like and large exoprotein involved in heme utilization or adhesion
Organism
vni
Vibrio nigripulchritudo
Pathway
vni02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
vni00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
VIBNI_A1817
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Big_9
Cadherin_4
Cadherin_5
VWA
Cadherin
VWA_2
HemolysinCabind
DUF3006
Motif
Other DBs
NCBI-ProteinID:
CCO57918
UniProt:
U4KFK7
LinkDB
All DBs
Position
1:complement(1903526..1912213)
Genome browser
AA seq
2895 aa
AA seq
DB search
MDSIQSLLSSAIASVGQMIVIDQQGNIRVVPKGTPLLPGEVILETDGASKDGAAPRAGIV
DDNQDINQLELDEDIQEIFAALEGGEDPTQLDDEFATAAGDASSGSSLTTSGEIERIGAQ
SIAETSFDTGSFERQGLSRTQSLTLLESYRILLTATTDSGPEGAPSVAIPEAVNSVNAEE
AEDGVDLLITVPAGTTIEDTIFVEVSTPTGESVFIEVPVPDDWDGTSPIVVTIPSGNLNT
DGSYTVTSEVFKPNGDSTSTSAPVTFDLDTTPPSTPTVTITEDANNDGTLSDDELDGQVT
VTVQIPSDAEVGDVLKVTGQPDTIITQDMINAGSITLEYDRPADGETLDITATITDQAGN
TSTAGNDSVVTEDNTPTGAPTVQILDDANNDGILTSDENDGSVDVRITLPEGVKVGDVLK
VTGQPDIVINQEQIDVGFITVSYPVPEQNETLTVNATVTDSSGNVSAAGSDSVTGENIND
NPVIGDENGDPVGDSITVSVNEDTTKSGKLTASDVDGDDLTFSKGTDPSNGTVTVDADGN
WSYTPNENYNGNDSFTVVVSDGNGGTDTITINVEVAAVNDDPTATAENVEVNEDASVTGQ
IEASDVDLPAGESLTFTTDEVVKGLTLNSDGSYTFDASEYDDLKEGQELVISVPVTVTDD
AGGSTTTTLTITVTGSNDPADVTAGVANLTESDSVLSANGKLESTDPDGNDNTFKPTTIN
GTYGVLTLQADGTWNFESHTALDELDANDKVTEQFVVETEDGTKTTIDINIQGTNDAPVV
ETQTQAWIFEDDTSKTVKGFTVNDPDASDSHTFTIVSQPDTSLGEFEMRADGSWTFVLTD
TEAADKLPEGHKLNEVYQIEVKDSQGATTVVDVTVTIIGKNDAADVTAASKTLTETDAVL
RTSGTLTHTDVDGADNTFKADTIEGDIGTLYMHKSGEWQFVADGTYDHLDDGEHVTETFN
VFTEDGTPTTITIRIDGTNDAPVAVADTATTQEDNSVTIDVLANDTDAEDNALTIKEASV
SSEQGTVAIVDGKIVFTPADNFNGEATITYTVTDGKLDSEPSTVKVTVEAVNDQVGAVTD
SNENDNTVAENAAIGTEVNITGLAVDPDGQKVTYSLTNDADGLFTINPETGVVTVNGALD
HETSDSHTIEITATSEDGSKSSQTFVINVSDIDEIAPEAPGVTITEDANNDALISDAELD
GQVNVTISLAGTNAVAGDTLTVNGTNILLTDDHISAGEVLTSVDAPSEGETLTVEATITD
IAGNVSEKGTTEAVIDTEVKAPTITIAGDTNNDGVYNAEELGTDGTVTATISLPDDFNAE
TDTLTINGETVSADDIVDGKVTVEVAPEGTVTAQITDAAGNVSDEASETALAADTEVKAP
TITNITDDSVNSDYSDVTLHGTGSEVGNIIEVFAKDSDGNYVSIGTATVQADLSWTLDIS
SISVTPINDNEFMFAKETDSAGNVSEASDTVHYYHGSYDPAVTESSDDYVLLGGGRDDLQ
MVSDDDNDYFVADGGAHDDKAIFSDSIENYVISVNSAGEIVVFEPSENDTNVFREFERFT
FGDETYTVEQLLKPTVTITSDVNDDGVLAGSEVESSVSYRVDLPAGAAVGTVLLVTLPSG
VQSITLTEQQIEDGHVTGSYTTPSEGSDLTISVSITHANGQEYTSSDSVHVNEAPEVNDF
TVSSTSSVFNIPFSGNATDTEDDSSADKTTDIVVTELPQFGSLYVINEDGSKTKLEVGSV
VADSAVVKYELDSDVNENLSFDSTAFNNDTPINNLSQIALDSGVVITGGVVGNDGSLTQG
TLNYDSDVNEVGIGVNGGEIESGNKEYVSIDFGDNVNVTEANVSLASLHGHYSNAGLGID
AKVHIELYKDGVLQTTVVVDSSSDIVNSQYVANLQLDGGFDEIRLTTTANQNSNFTLTGV
EVVDSQINDEIEYKAVDSDGQESDGTATVDISIPSSESALERAPVVNGDADFGSSDEDNA
FIIDAAKLQILLNTATDENQDDLFISSLSVDESKGELVVTTNAQGEVTGAVFYPNEDMAA
EDIKFDFTVSDGKLSDTGSAYLDVAPVADAPEVDVLITGAAERNYDDFPTWGISTEDFQT
GNFDKSQFNIANEKTDSKTWAETIHGTSGNDYIVSTHGGGDSIYGDVHQNYHNDGDDILV
GSDDTNGESLYGGNGKDILVSGLGVDSLHGGTGTDIAILPGKSTDYTVTKGSGYSSNDKW
FDFTSVENGVEVTKALHDIETVQFEDGIYTLNSTTGELVLVEPTSTEYPLEIEASLNDTD
GSESLSQIEISGLVQGDVLKGSDGSVLGTAGSDGTITLTGPWDSDATKVTLTGLTLVSSA
SNASEITVTATSQEGSDTSNTATADDSIVLSDFVGTTIGGDGQTYTTGDTHDTVVGDTTG
TVVTHGQDYNIAFMVDTSGSMGSSNIDDIEDQLEKVFESLINSAKGEHSGTVNVMLVDFD
TLAHTSVSVNLADPDAEDKLEDVLDSLRSGGGTNYEDAFTVTNNWFETVKTTHPDANNMA
YFITDGRPTYYTTDVTDPLVYNSSYNSNDRTLSDILGNSDYVPGQSYSYQGKLIIDTYGR
VYSYNSWSSDATFQGYMRPDGTGEHEFVQIAGRGYNADNATISNANSGFDLLENSGVTVE
AIGIGNSLDENQLKDFDTDGNVQANVDADDLAEAILGHSEDKLPGEDTIDAGAGDDILFG
DSIHMAGVSSQGYEGIKEYVAGKLGVVEVSDAQVHNYITENVNEFNQSTDKDKADTLYGG
SGDDIMFGQGGNDSLYGGAGNDILLGGLGNDILTGGDDADVFKWVKTDLDGSTDRITDFH
IDDGDKLDLSDLFSDLSDTEVTSLLDNIKGSVDGDDSGSSITVNKDGNSVTIDFDGVSAT
DLTNNLTTILLIKDD
NT seq
8688 nt
NT seq
+upstream
nt +downstream
nt
atggattctattcagtctcttttatcttcagcgatcgcaagtgttggtcaaatgattgtt
attgaccagcaaggaaacattcgagttgttccaaaaggaaccccacttttacccggagaa
gtcattcttgaaaccgacggtgcttccaaagacggtgcggcaccacgagcgggtattgtt
gacgataatcaagacatcaaccagcttgagcttgatgaagacattcaagaaattttcgca
gccttagaaggcggagaagacccaactcagttggacgacgagttcgcaactgctgcgggt
gacgcttcatcgggctcaagtttaactacatccggtgaaatcgagcgtattggtgcgcaa
tccattgcagaaacatcgttcgatacaggcagctttgaacgccaggggctgtccagaacc
caaagcctgacacttctagaatcctatcgaatcttgctaaccgccacgaccgattcgggt
ccagaaggtgctccttctgttgctattcccgaagcggtgaactctgttaatgctgaagaa
gcagaggatggtgtcgatctactaatcacagtgccagcaggcacaacgatcgaagacacg
atatttgtcgaagtttcgacacctactggtgaatctgtcttcattgaagttcccgttcct
gatgactgggatggaacctctccaattgttgtgactattccgtcaggaaatttaaataca
gatgggagttacacggtaacatctgaagtgtttaagccaaatggagattcaacctctacc
agtgcaccagttactttcgatttagatacaacaccaccgtctacaccaacagtgaccatc
acagaagatgcaaataacgatggaacgctaagtgatgatgaattagacggtcaggtaaca
gtcactgttcaaatcccgtccgatgcagaagttggcgacgtattaaaagtgacaggacag
cctgacactatcatcactcaagacatgatcaacgctggctcaatcaccttggagtacgac
agaccagctgatggtgaaacccttgacataacagccactattaccgaccaggcaggtaac
acctctacagcgggtaacgatagtgttgtaacagaagacaatacaccaacaggtgcacca
accgttcagattcttgatgatgccaacaatgatggcatattaacatctgatgaaaatgac
ggttcggtggatgttcgaatcacactaccagaaggtgtgaaagtcggtgacgtgcttaaa
gtgactgggcagccagatattgtcatcaatcaagaacagattgatgtcggatttatcact
gtcagttacccagttcccgagcaaaatgaaacactaacagtaaacgcgacagtaacagac
tcttcaggtaatgtgtccgcagcaggcagtgactcggttactggtgagaacatcaatgat
aatccagtaattggcgatgaaaatggtgatcctgttggtgactcaattactgtatctgtt
aacgaagatactactaagtcaggtaagttaaccgcttcggacgttgacggagacgacctg
acgttttcaaaaggcacagatccatccaatggaaccgttactgttgacgcagatgggaac
tggtcttatacaccgaatgaaaactacaacggaaatgacagctttaccgttgtagtcagt
gatggaaacggtggtacagataccatcactatcaatgttgaagtcgcagccgttaatgac
gacccaacagcaaccgctgaaaacgttgaagttaatgaagacgcaagcgtaaccgggcag
atcgaggcatctgatgtcgatcttccggctggggaatctctgacctttacaactgatgaa
gttgtgaaaggtttgacactaaattcagacggttcgtacacattcgacgcaagtgaatat
gatgatctgaaagaaggtcaggagctcgtcattagtgtgcctgttactgttacagacgat
gcaggcggcagcactacaacaacactcaccattaccgtgactggcagtaacgatcctgca
gacgtaacggcgggtgttgcaaatctcacagaatccgattcagtattgtcagcaaacggg
aagcttgaaagtaccgaccctgatggtaacgacaatacgttcaaacctacaacgatcaat
ggtacctacggtgtgctgactcttcaggcagacggtacctggaacttcgaatcccacacg
gctttggatgagctggacgcaaacgacaaggtaacggaacaatttgttgttgagaccgaa
gacggaacaaaaaccaccattgacatcaacattcagggaaccaacgatgcccctgttgtt
gaaactcagactcaagcttggattttcgaagacgacacatcaaagaccgtaaaaggcttt
acggttaatgaccctgatgccagtgacagtcatactttcaccattgtttcccaaccagat
accagtcttggtgaatttgaaatgcgagcagacggtagctggacgtttgttctaaccgat
accgaagccgctgataaactgcctgaaggtcataagctcaatgaagtttaccaaatcgaa
gtcaaagactctcagggtgcgacaacagtcgtagacgtaacggtaaccatcataggtaag
aacgatgctgctgacgtcaccgcagcatcaaagacacttacagaaaccgatgcagtgcta
agaaccagtggcactctgacgcacactgatgttgatggtgcggataacacctttaaagct
gacactatcgaaggtgatataggcacactctacatgcacaaaagcggcgaatggcagttt
gttgctgatggcacatacgatcatctagacgatggcgaacacgttacagaaacctttaac
gtctttaccgaagacggtacaccaacaaccatcactattcgaatcgacggcacaaacgat
gcaccagttgcagtcgctgataccgctacgacgcaagaagataactctgtaactattgac
gttcttgcaaacgacacagacgccgaagataacgccttaacaatcaaagaagcttctgtt
tcatcagaacaaggcaccgtcgccatagtcgacggaaaaattgtcttcactccagccgac
aatttcaacggcgaagcaacaattacctacacagtaactgatggcaagttggatagtgaa
ccttctacagtgaaagtgaccgtagaagcggttaatgaccaagtaggtgcagtaacagat
tcaaatgaaaacgacaatactgttgcggaaaatgcagcgataggaacagaagtcaatatt
acaggtcttgctgttgaccctgacggtcaaaaagtaacttactcacttactaacgatgca
gatggtctattcaccatcaacccagaaacaggagtcgttaccgtaaatggcgctctcgac
cacgaaacctctgattctcacaccattgaaatcactgcaacctcagaagacggcagcaaa
tctagccaaacattcgtcatcaatgtcagtgatattgatgagatagcaccagaagcacct
ggcgtaaccatcactgaagacgcgaacaatgatgctctgattagtgacgcagagcttgac
gggcaagtgaacgttaccatttctctggcaggcacgaacgcagtcgcaggcgacacatta
acggtaaatggtacgaatatcttactgactgatgatcatatcagtgcaggtgaagtcctg
acgagtgttgatgcaccatcagaaggcgagacactaactgtcgaagcaaccattacagat
atagctggcaacgtgtctgagaaaggcacaactgaagctgtaattgacacagaagtgaaa
gcaccgacgatcaccatcgcaggcgataccaataacgatggtgtgtacaacgcagaagaa
cttggaacagatggcaccgtgacggcgaccatcagcttgccagacgacttcaatgcggaa
accgacacgttgaccatcaacggtgaaaccgtgtctgcggatgacatcgtagatggcaaa
gtgacagtcgaagtggcgccagaaggcaccgtgaccgcacaaatcaccgatgcggcgggt
aacgtctctgacgaagcgagcgagacagcgttggcagcggacacagaagtgaaagcaccg
acgatcaccaacatcaccgatgattcagtgaatagtgactactctgatgtgactttgcat
ggtacgggtagtgaagtcgggaatattattgaggtatttgctaaagattctgacggtaac
tatgtatctattggtacagctaccgtccaggctgatttgagttggaccctcgatatttcg
agtatcagtgttacgccgatcaacgacaatgaattcatgtttgctaaggaaacggattct
gctggaaatgtgagtgaagcatccgataccgttcattactaccatggcagttacgaccca
gccgttacagagtcttctgacgactacgtacttcttggaggaggtcgagatgatctacaa
atggtttccgatgacgataatgactactttgtcgcggatggtggtgcccacgatgacaag
gcaattttctctgattccattgaaaactatgtgatcagtgttaacagtgctggcgagatt
gtagtatttgagccatctgagaatgatacgaacgtattccgagagtttgaacgctttacg
tttggcgatgagacttacacagttgaacagcttctgaaacctacggttaccattaccagc
gatgtgaatgatgacggtgttcttgcaggttctgaagttgagtcatctgtaagctaccga
gttgatcttcctgccggtgcagcagtgggcacagttttgcttgtaacgcttccttccgga
gttcagtctattactcttacggagcagcagattgaagacggtcatgtaaccggttcttac
actacgccatcagaaggtagtgatttgactattagcgtttctattacacatgcgaacggt
caggaatacacgtcgtctgattctgttcatgtgaatgaagctccagaagttaatgatttc
acagtgtcttcaacatccagcgtcttcaatattcctttctctggtaatgcaacggataca
gaggacgacagcagtgctgataagacgacagacatagtagtgaccgaattaccacagttc
ggcagcctttacgtcattaacgaggatggttcgaaaacgaaactggaagttggctcggtt
gtcgctgattctgctgtcgttaaatatgaacttgatagtgatgtaaatgaaaatctaagc
ttcgattcgacagcattcaacaacgatacgccaatcaataatttgtcgcagattgctctg
gatagcggagtagttatcaccggtggtgttgttggcaatgatggttcacttacgcaaggt
accctgaattacgatagtgatgtaaatgaagtcggtattggtgtaaatggtggtgaaatc
gaaagtggtaacaaagaatacgtttccatcgacttcggtgacaatgtcaatgttactgaa
gctaacgtatctttagcgagcctacatggacactattcaaatgcaggtttgggtattgat
gccaaggttcatattgagttatacaaagatggcgttctgcagacaactgtagttgtagac
tcttctagcgacatcgtaaattctcagtatgtagcgaatctgcagcttgatggtggcttc
gatgaaatccgcctgactaccacagcgaaccaaaactccaactttacgttaacgggcgtc
gaggttgttgactctcaaatcaatgatgaaattgagtataaagcggtagattcagatggt
caggaaagtgatggaacagctactgtcgatatcagtatccctagctctgaatccgccctg
gaacgtgctccagtcgtaaacggagacgctgattttggtagctcggatgaagataatgca
ttcatcattgacgcagctaaacttcaaatcctgctcaatactgctaccgacgaaaatcag
gatgacttgttcatttcttcactgtctgtagatgagtctaaaggtgagctggttgttacc
actaacgctcaaggtgaggtaacaggagctgtattctatccaaatgaagacatggcggct
gaagacatcaagtttgatttcactgttagtgatggaaaactatcagacactggctctgct
tatttagacgtagcgcctgtagcagatgcacctgaagttgatgtgttaattacaggagct
gcagagcgaaattacgatgacttcccaacatggggtatatcgacggaagatttccaaaca
ggaaactttgataagtcacagtttaatattgctaacgagaaaacggacagtaaaacctgg
gcagaaacgatacatggcacatcgggtaatgactacattgtgagtacccatggtggaggt
gattctatctatggagatgttcaccaaaattaccacaacgatggtgacgatatcttggtg
ggcagcgatgatactaatggtgaatctctgtatggaggtaatggaaaggatatcctcgtt
tctgggctgggtgttgactctctacacggtggcacaggaacagatattgcgattttgcct
ggtaaatctacagactacacagtgacgaaaggatcaggttatagctctaacgataagtgg
tttgatttcaccagcgtagaaaatggcgttgaagtcactaaagctctgcatgacatcgaa
acggttcagttcgaagatggtatttacacgctgaattcgacaacaggtgaactcgtcctt
gttgagccgacttcaactgaatatccattagaaatagaagcgtcactaaatgacacagat
ggaagtgaatcactaagtcaaatcgaaatatcaggtcttgtgcaaggtgatgtcttgaaa
ggaagtgatggttctgtattaggcactgcgggctcggatggcactattactttgaccggt
ccttgggattctgatgccaccaaagttaccctgacagggttaactttagtttcttctgca
tctaatgcatctgaaataacggttacagctacttctcaggaaggaagtgatacatcgaat
accgcgacagcagatgactcaattgtgttgagtgattttgtaggaacaaccattggggga
gacggccagacttacactaccggagacactcatgacactgtagtaggtgacacaacaggt
actgtggttactcatggtcaggactacaatatcgccttcatggttgatacatcaggaagt
atgggtagcagtaatattgatgacatcgaagaccaacttgagaaggtctttgaaagtttg
atcaacagtgctaaaggtgagcactctggaacggttaacgtcatgctagtcgatttcgac
actctggcgcataccagcgtgagcgtgaatctagcggatccagacgcggaagataagctg
gaagacgtattggatagtctcagatctggaggcgggaccaactatgaagatgcattcact
gtgacaaacaattggtttgaaactgtgaagacaacgcatccagatgcgaacaatatggct
tactttattaccgatggacgcccgacttattacactactgatgttaccgatcctttggtt
tacaacagcagctacaacagtaacgatcgaacgttgagtgatatcttgggcaactcagat
tatgtccctggtcaatcttattcataccaaggcaagctgattattgatacgtatggaaga
gtttatagctataactcttggtcaagcgacgcgactttccaaggctatatgcgtccagat
ggcacgggtgagcatgagtttgttcaaatcgctggccgtgggtataacgcagataacgcc
acaatttcgaatgcgaattcaggttttgacttacttgaaaacagcggagtcaccgttgaa
gcgataggtatcgggaatagccttgatgaaaatcagttgaaggactttgatactgatggc
aacgttcaggcgaatgttgatgctgatgatctagctgaagcgattctagggcattccgaa
gataagcttccgggtgaagataccattgatgctggcgctggcgatgacattctgtttgga
gactcaatccacatggctggagtaagcagtcagggttatgaaggtattaaagagtatgtt
gctggcaaactgggtgtggttgaagtatccgatgcgcaagttcataactacatcactgaa
aacgtgaatgagttcaaccaatctaccgacaaggataaggctgataccttatacggtggt
tctggtgatgacatcatgttcggtcagggaggcaatgattcactgtacggtggagcaggt
aatgacatcttgttaggcgggttaggcaacgatatcttaactggtggtgacgacgctgat
gtgttcaagtgggttaaaactgatttggatggcagcacggaccgtattaccgacttccat
atcgatgatggtgataagctggacttaagcgatctgttctcagatttatctgatacagaa
gtaacgtccttgctagacaacattaaaggttctgtggatggcgatgacagcggatcaagc
attactgttaacaaagatggaaattcagtcacgatagactttgacggtgtgtcggcgaca
gatttgaccaacaacttaaccacaattcttttgattaaagacgattga
DBGET
integrated database retrieval system
