Vibrio nigripulchritudo: VIBNI_A2036
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Entry
VIBNI_A2036 CDS
T02871
Name
(GenBank) putative YkuD super family protein
KO
K21470
L,D-transpeptidase YcbB
Organism
vni
Vibrio nigripulchritudo
Brite
KEGG Orthology (KO) [BR:
vni00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
vni01002
]
VIBNI_A2036
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
vni01011
]
VIBNI_A2036
Peptidases and inhibitors [BR:
vni01002
]
Cysteine peptidases
Family C82
VIBNI_A2036
Peptidoglycan biosynthesis and degradation proteins [BR:
vni01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
VIBNI_A2036
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
PG_binding_1
PG_binding_3
Motif
Other DBs
NCBI-ProteinID:
CCO58124
UniProt:
U4K645
LinkDB
All DBs
Position
1:complement(2168498..2170111)
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AA seq
537 aa
AA seq
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MRLRKYFYFMIIAMLPLASGANSYYATTWVNSSTPAHTPLAHQPVITALYHEYQYQPIWF
QYDAIEAFETQLEHLALADVSELFYKRLMALKEARYHNRWQEYDVLATDTLLSYISYTEL
SQSMGKGWFFGGRVPAMLPTPSGSRFETFYNAVMSDSLVEYIEGLKPQSPLYSDYVTAIY
ELKPWLNVYLSDYSQKKRFTRKGDVLSHKRVLLNRLQVLGYDVSAVNADDKTYDKPLDDL
VRQFQVQHGLDADGIIGPKTIKWINASIEERLRLVALNAQRLRIWPLQRDQIVLVNVPQY
SMSYWLDGKEAFSSDVIVGRPSRKTPLIDTRMDSVIVNPSWNVPRKIMVKDILPKAIEEE
TYLQEHNYEIVESWHNRALVDPQDIDWQTIDPDSFPYRIRQTSGPYNALGKYKFNTPNKN
AIFLHDTPAKSLFTKARRAFSSGCIRIESAEGFANLLLTSNSKLRPSHQERISREETVAV
ALKQRIPVSIIYQTVWTERGQVQYRSDIYKYDQLSRSSNFDAKLTNLINLDKNLSAQ
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgaggttaaggaaatacttttatttcatgatcatagctatgcttccactggcttccggc
gctaacagttactacgccacaacctgggtgaatagctcaacgccagctcatacacctctg
gctcaccaacctgtcattaccgcgctttatcacgagtatcaatatcagcctatctggttt
cagtacgacgcgattgaagccttcgaaacgcagcttgaacaccttgctctggctgatgtg
agtgagcttttctataaacgtttgatggcgctaaaagaagccagatatcacaatcgctgg
caagaatacgacgtgctggcgacagacactttgctgagttacatcagctataccgagctc
tctcagtctatggggaagggctggttttttggtggacgagttccagccatgctgcccact
ccgtcaggctctaggtttgagactttttataacgcagtaatgtctgactcgttggttgaa
tacattgaagggttgaaacctcaatcgccgctgtattctgattatgtaaccgccatctat
gagctgaaaccctggttaaacgtctatttgagcgactacagccagaaaaagcgcttcacc
cgcaaaggagatgtgctgtcacacaaacgggtgctgcttaatcgcctgcaggtgctaggt
tatgacgtgtcggcggtgaatgccgatgacaaaacctacgataaacctctggacgatttg
gttcgtcagtttcaggttcagcatggtctggacgcagacggcattatcggtccgaaaacc
attaagtggatcaatgcttctattgaagagcgtttaagacttgtcgccctgaatgcgcaa
aggctgcgtatctggccattgcagcgcgaccagattgttctggtgaatgtaccgcagtac
tcgatgtcttactggctagatggtaaagaagcgttttcttcagacgtgattgtagggcgt
ccatcaaggaaaacaccgctcattgataccagaatggattcggtgatcgtgaatccaagc
tggaatgtaccaaggaaaatcatggtgaaagacattcttcccaaagcgattgaggaagaa
acttaccttcaggaacacaattacgaaattgttgaaagctggcataaccgggctctggtc
gacccacaggatatcgactggcaaaccattgacccggacagctttccgtaccgaatccga
caaacttcaggaccatacaacgcacttggcaaatacaagttcaatacgccaaataaaaac
gccatttttctccacgatacaccggcgaagtcgctgttcactaaagcgagaagggcattc
agttctggttgtatccgaattgaatctgccgagggttttgccaatctgcttttaaccagc
aactctaagctgcgtccaagtcatcaggagagaatcagccgtgaagaaacggttgctgtg
gcactgaaacaacgcattcctgtttctattatttatcaaacggtttggacagaaagaggg
caggtgcaataccgaagcgacatctacaaatacgatcaactgagtcgtagttcaaatttt
gacgcgaaacttacaaatttgatcaatctggataaaaatctttctgctcaataa
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