Vibrio nigripulchritudo: VIBNI_A2425
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Entry
VIBNI_A2425 CDS
T02871
Symbol
hupB
Name
(GenBank) DNA-binding protein HU-beta
KO
K03530
DNA-binding protein HU-beta
Organism
vni
Vibrio nigripulchritudo
Brite
KEGG Orthology (KO) [BR:
vni00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vni03032
]
VIBNI_A2425 (hupB)
03036 Chromosome and associated proteins [BR:
vni03036
]
VIBNI_A2425 (hupB)
03400 DNA repair and recombination proteins [BR:
vni03400
]
VIBNI_A2425 (hupB)
DNA replication proteins [BR:
vni03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
VIBNI_A2425 (hupB)
Chromosome and associated proteins [BR:
vni03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
VIBNI_A2425 (hupB)
DNA repair and recombination proteins [BR:
vni03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
VIBNI_A2425 (hupB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_2
HU-CCDC81_euk_1
Arteri_nsp7a
ACP_syn_III_C
HU-DNA_bdg
VWA_2
DUF7342
Motif
Other DBs
NCBI-ProteinID:
CCO58489
UniProt:
U4K758
LinkDB
All DBs
Position
1:complement(2578363..2578635)
Genome browser
AA seq
90 aa
AA seq
DB search
MNKTQLVEKIAENADISKASAGRALDAFIEAVSDTLQSGDQVALVGFGTFSVRTRAARTG
RNPKTGEEIQIAEAKVPAFKAGKALKDACN
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
gtgaataaaacacaactagtagaaaaaatcgcagagaacgctgacatttctaaagcatca
gcgggtcgtgccctagacgcattcattgaagcagtgagtgacactctacaatctggcgac
caagtagcattggttggcttcggtactttcagcgtacgtactcgtgcagctcgcacaggt
cgtaaccctaagactggtgaagaaatccaaatcgcagaagctaaagtaccagctttcaaa
gcaggtaaagcgcttaaagacgcgtgcaactaa
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integrated database retrieval system
