Vibrio nigripulchritudo: VIBNI_A2489
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Entry
VIBNI_A2489 CDS
T02871
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vni
Vibrio nigripulchritudo
Pathway
vni03030
DNA replication
vni03430
Mismatch repair
vni03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vni00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VIBNI_A2489 (dnaE)
03430 Mismatch repair
VIBNI_A2489 (dnaE)
03440 Homologous recombination
VIBNI_A2489 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vni03032
]
VIBNI_A2489 (dnaE)
03400 DNA repair and recombination proteins [BR:
vni03400
]
VIBNI_A2489 (dnaE)
Enzymes [BR:
vni01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VIBNI_A2489 (dnaE)
DNA replication proteins [BR:
vni03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VIBNI_A2489 (dnaE)
DNA repair and recombination proteins [BR:
vni03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VIBNI_A2489 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
CCO58551
UniProt:
U4K7G8
LinkDB
All DBs
Position
1:complement(2648594..2652073)
Genome browser
AA seq
1159 aa
AA seq
DB search
MSDPKFIHLRVHSDFSMVDGLSKVPPIVKKVAEYGMPAMALTDFTNLCGLVKFYNTAHGC
GVKPIIGADFTMQSEEFGDELTKLTVLASDNTGYKNLTLLISEAYQRGHVQHQPVIDKSW
LAQYSEGLIILSGGRVGEVGRALLKGNQALVSECVEFYKTHFPDRFYLELTRTGRADEES
YLHFALDLADKAELPVVATNDVVFITEDQFDAHEIRVAIHDGFTLEDPRRPKNYSPQQYL
RTEDEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPNFPTEGLAIEDFLIKKSKEGL
ERRLAFLFPDEEERAKRRPEYDERLDIELEVVNNMGFPGYFLIVMEFIQWSKDNDVPVGP
GRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDKRDQVIDHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQ
LPEIYEVDEEVKELIDMCRVLEGCTRNAGKHAGGVVISPTTITDFAPIYCDAEGNFPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKVGKEKVRIESIPLDDQASFNLL
QNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDETWQHESLKDTLEPTYGIILYQEQVMQIAQILAGYTLGGADMLRRAMGKKKPEEM
AKQRAVFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
EFMAAVMTADMDNTEKVVGLVDECFRMKLKVLPPDINSGLYRFNVDDTGAIVYGIGAIKG
VGEGPIENIIAAREEGGYFKDLFDFCARIDLKKVNKRVIEKLIYAGALDRLGPHRAAMMA
SLDDAVKAASQHHQAESFGQVDMFGVLTDAPEDVETKYTQVPAWPEKVWLEGERETLGLY
LTGHPINTYIKELGKYTSCRLKDAQPTRRDQSVAVAGLVIAARVMTTKRGTRIGIMTLDD
RSGRMEVMLFSDALERYAELLEKDKILVVSGQVSFDDFNGGLKMSAREVMDLGNAREKYA
RGLSVSIQEQQIDEHFFERFNQILEPHRAGTVPVNVYYQRSDARARIALGAEWRVTPTDT
LLDDLKQLLGQGQVELEFN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacccgaaatttatacacctacgcgttcacagtgacttttccatggtcgacggg
ctgtcaaaagtcccgcctatcgtaaagaaggtcgctgaatacggcatgccagcgatggca
ctgaccgatttcaccaacttatgtggtttggtgaagttctacaatacggcgcatggctgt
ggggtaaaacccattatcggagcagattttacgatgcagtcggaagagtttggcgacgaa
ttgactaagcttaccgtattggcatcggacaatactggttataaaaaccttaccttgctc
atttctgaagcctatcaacgaggacatgttcagcatcagcctgttatcgataaatcgtgg
ttagcccagtacagcgagggattgatcatcttatccggtggtcgtgtgggtgaagtaggg
cgtgcgcttctcaaaggcaaccaagccttggtgtccgaatgtgtagagttctacaaaact
cattttccagatcgcttttatttggaactgacccgaacaggtcgtgccgatgaagaaagc
tatctgcacttcgcactggatctggcagataaagcagaattgccagtcgttgcaaccaac
gacgtagtctttattactgaagatcagttcgatgctcatgaaatccgggttgccatccac
gatggttttacgcttgaagatccccgtcgaccaaaaaactacagcccgcagcaatatctt
cgcactgaagatgaaatgtgtgagctgttttcagatattccagaagcattggaaaacagt
gtcgagatagccaagcgctgtaatgtcaccgtgcgccttggggaatacttccttccaaac
ttcccaaccgaaggtctggcgattgaagatttcctgatcaagaaatccaaagaagggctt
gagcgccgacttgcgttcttatttccagatgaagaagagcgagcaaaacgtcgcccagag
tacgatgagcgtttagatattgaactggaagtagttaacaacatgggattcccaggttac
ttcctgatcgtaatggagttcatccagtggtcaaaagataacgatgtaccagtaggtccc
ggtcgtggttctggtgcaggttctctcgtggcgtatgcactggacatcaccgaccttgat
ccattggaatacgatctgctattcgaacgattcctaaacccggaacgtgtttccatgccc
gatttcgatatcgatttctgtatggataagcgagatcaggttatcgatcacgtagccgaa
atgtacgggcgtgatgcggtatctcagatcatcaccttcggtaccatggcagcaaaagcg
gtaatccgagacgtaggtcgagtgctagggcacccttatggctttgttgaccgcatttca
aaactggtaccgcctgatccgggtatgacgctagagaaagcgtttgcagccgaacctcag
cttcctgaaatctatgaagtggacgaagaagtcaaagagctgatcgatatgtgccgtgtg
ctggaagggtgtacacgaaacgccggtaagcacgcgggtggtgttgtaatctcacccaca
accatcactgactttgcgcctatttactgcgatgcagaaggtaatttcccggttactcag
tttgacaagaacgatgtagaaactgcgggcttggtaaagtttgacttcctgggtctacgt
acattaaccatcatcgactgggcgttgggtctgattaacccacgcttagaaaaagttggc
aaagagaaggtgcgcattgagtccattccacttgatgaccaagcctcttttaacctgctg
caaaactccgaaacgactgcggtattccagctcgaatcccgagggatgaaggaactgatc
aaacgccttcagccggactgttttgaagacatcatcgcactggtagcccttttccgtcct
ggtccacttcaatcaggcatggtagacaactttatcgaccgtaagcacggacgtgaagcc
atttcctaccctgatgaaacctggcagcatgagtcgctcaaagatacgttggagccaacc
tacggcatcatcctgtatcaggaacaggtaatgcaaattgcacagattctagcgggttat
acgctgggtggtgcagatatgcttcgtcgtgcgatgggtaagaaaaagcccgaagagatg
gcgaagcaacgtgccgtattcgaagaaggtgccgtgaagaacggcgttgatggcgaattg
gcgatgaagatctttgacctggtagaaaagttcgcaggttacggcttcaacaaatctcac
tctgccgcatacgcactggtttcttaccaaacgctttggcttaaaactcactatccggcg
gaattcatggcagcggtaatgactgctgatatggataacaccgagaaagtggtcgggctg
gtggacgaatgtttccgcatgaagcttaaagtgctaccgccagatatcaactcgggcttg
taccgttttaacgtggatgatactggtgccattgtctatggtatcggcgctattaaaggc
gtgggtgaaggtcctatcgagaacatcatcgcagcgcgtgaagaaggtggatacttcaaa
gatcttttcgacttctgtgctcgaatcgaccttaagaaagtcaacaaaagggttatcgaa
aaactcatctacgcaggtgcactggatcgcttaggtccacaccgagcagcgatgatggcg
tctcttgacgacgctgtaaaagcggcgagtcagcatcaccaggctgaatcatttgggcag
gtggacatgtttggtgttctcaccgatgctccagaggacgtagagacaaaatacacccaa
gttccagcatggccggaaaaggtatggctggaaggggaacgtgaaacactcgggctctat
ttgaccgggcacccaataaatacctacatcaaggaacttggtaagtacaccagttgtcga
ttaaaagacgcccagccgacaagacgagatcaatccgtcgcagtagcgggtttagtgatt
gctgccagggtgatgaccaccaagcgtggtactcgcatcggcattatgacactggatgac
cgttccgggcgtatggaagtgatgttgttctcagatgcgctcgaaagatatgcagaactg
cttgaaaaagataaaattttggtggtttctggacaggtcagctttgatgacttcaatggt
ggccttaaaatgtccgcgcgcgaggtcatggatctcggaaatgcgcgtgaaaaatacgct
cgtggtttgtccgtttctatacaagaacaacaaattgatgaacatttctttgagcgcttc
aaccaaatattggagcctcatcgagcgggaacagtgccagttaatgtatattatcaacgc
agcgatgcgcgggcgcgaatagcactgggcgccgaatggcgagtaacgccaaccgataca
ttacttgacgatttaaagcagctacttggccagggtcaggtagaactcgaatttaactaa
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