Vibrio nigripulchritudo: VIBNI_A2525
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Entry
VIBNI_A2525 CDS
T02871
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
vni
Vibrio nigripulchritudo
Brite
KEGG Orthology (KO) [BR:
vni00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vni03016
]
VIBNI_A2525 (rnd)
Enzymes [BR:
vni01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
VIBNI_A2525 (rnd)
Transfer RNA biogenesis [BR:
vni03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
VIBNI_A2525 (rnd)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Alpha-amylase
Motif
Other DBs
NCBI-ProteinID:
CCO58584
UniProt:
U4K7E9
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All DBs
Position
1:complement(2685435..2686550)
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AA seq
371 aa
AA seq
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MNYQIVDTKEALEAVCLAARDADTVMLDTEFVRTRTFYPQLGLIQLFDGNVLSLIDPTVI
SDMTSFVGLLKDTSVLKVLHACGEDLEVFAHVFGTIPVPMMDTQIMAAFLGHGLSTGFAA
LVKEYLGVELDKSEARTDWLARPLTNKQLEYAAADVHYLLPMYEKLEAAVKDAGWWEAAQ
QESDLIASKRVVTHNPEKAYLDIKGAWQLRPNQLAILKILAQWRLEEALKRDLALNFVFR
EQNLWACARFGIKGLKQMEQQGFDHREIRRHGNTVISMVKKGEQVPQDEHPDVIERLMDK
PGYKQLFKQLKDEVKKASQKSGLATEFLASKKQINQLISWVWKKDRNPASVPDVMQGWRK
ELFGERLDKLV
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
gtgaactaccaaatagtcgatacaaaagaagcattggaagctgtttgtttagctgcgcgc
gacgccgatactgtgatgctggacaccgagtttgtccgaacccgcactttttaccctcag
cttggcttaattcagctatttgatggcaatgtgctttccctcattgatcctactgtcatt
tccgacatgacatcgtttgttggccttcttaaagacacgtcagtgctgaaagtgcttcat
gcctgcggagaagacttagaagtgtttgctcacgtgtttggcaccattccagtacctatg
atggacacacaaatcatggctgcgtttttaggtcacggtttgtcgaccggttttgctgca
ttagtgaaagagtacttaggtgtcgagttggataaaagcgaagccagaaccgactggtta
gcaagacctttaacgaacaagcaattggaatatgccgcagccgatgtgcattatttgctg
ccaatgtatgaaaagctggaagctgcggtaaaagacgcgggctggtgggaagccgctcag
caggaatcagatctgattgcatctaaacgcgtggttacccataacccagagaaagcctat
ctggacattaaaggtgcctggcagctcagaccaaaccagctcgccatccttaaaattctg
gctcagtggcgtttagaagaagcgttaaaacgtgatttggcactgaactttgtcttccgc
gagcaaaacctgtgggcatgcgctcgatttggcatcaagggcttgaagcaaatggagcag
caaggttttgatcatcgtgaaattcgtcgccatggcaatactgtaatttccatggtgaaa
aagggtgaacaggtgccacaagatgagcaccctgatgtgattgaaagactcatggataag
ccgggctataaacagctattcaaacagctgaaagacgaagtcaaaaaagcgtctcaaaaa
agcggattagcgacggagttcctggcatcgaaaaaacaaatcaatcagttgatcagctgg
gtatggaagaaagacagaaatccagccagcgtgccagacgtaatgcaagggtggagaaaa
gagctctttggagagcgtctggataagcttgtgtga
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