Vibrio nigripulchritudo: VIBNI_A3208
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Entry
VIBNI_A3208 CDS
T02871
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vni
Vibrio nigripulchritudo
Pathway
vni03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vni00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VIBNI_A3208 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vni03019
]
VIBNI_A3208 (rnr)
03016 Transfer RNA biogenesis [BR:
vni03016
]
VIBNI_A3208 (rnr)
Enzymes [BR:
vni01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
VIBNI_A3208 (rnr)
Messenger RNA biogenesis [BR:
vni03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VIBNI_A3208 (rnr)
Transfer RNA biogenesis [BR:
vni03016
]
Prokaryotic type
tRNA degradation factors
VIBNI_A3208 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
Casc1_C
OB_Dis3
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
CCO59221
UniProt:
U4K1U9
LinkDB
All DBs
Position
1:complement(3379894..3382353)
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AA seq
819 aa
AA seq
DB search
MSQNTPNDPFAARESDKYDNPIPSREFIIEFLEKANVPMNRNDLFDALKLSGEEQYEGLR
RRLRAMERDGQLVFTRRQCYALPDKLELVKGIVLGHKDGHGWVRPDGSTGKDNDILLPYH
QMKTLIHGDYVLVQPAGTDKRGRKEGRLVRVLEERKTQIVGRYFMEQEYSYVVPDDSRIS
QDVLIPKEHRCGARMGNVVVIEITDRATRSRGMMGKIVEVLGENMAPGMETQIAIRTHQI
PDVWPEEVEKQIAGLGEHVPEDAKKGRVDLRELPLVTIDGEDARDFDDAVFCEAKRGGGW
RLWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCM
VCEMTISASGRLSGYKHYEAVMNSHARLTYNKVSAILEGDEELRQRYEPLVPHLEELHKM
YGVLKQSRDNRGAIEFETVEAKFIFNSDRKIDRIEPVVRNDAHKIIEECMILANIASASL
VEKLKEPALFRIHETPGEERLQGFRDFLGELGLNLTGGLEPSPTDYANLMKQIGERQDKE
LIQTMLLRSMKQAVYNADNVGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKEDGRN
TDRWTPTGGFHYSFDDMDVYGEQCSMTERRADDATREVADWLKCEYMQDHVGEELDGVIA
NVTGFGFFVRLTELHIDGLVHISSLANDYYQFDPIGQRLIGESFGNIYRLGDAVKVKVLS
VNLDDRQIDFELVETSRKLRGKGKTAKKRAAQADKKAATKKKAAIKARKPGGKAKALVEP
TKRPDGSSEPAKTRKKTKAEKARKKKSRTKNRKSQGKKK
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaaaacacacctaacgacccatttgccgcgcgcgaatccgacaaatacgacaat
cctattcccagccgtgaattcatcatcgagtttttggaaaaggcaaatgtgccaatgaat
cgcaatgatttgtttgacgcactaaagctttctggagaagaacagtatgaaggcttgcgt
cgtcgactgcgtgccatggagcgtgatggtcaactggtgttcacccgacgccagtgttat
gccctgccagataagctggaattggttaaagggattgtactaggtcataaggatggacat
ggttgggtgagaccagatggcagtacaggcaaagacaacgatattctgctgccttatcac
caaatgaaaactctgattcacggtgattatgtattggttcagcctgccggaaccgacaaa
cgtggccgcaaagagggtcggttggtacgtgtacttgaagagcgtaagactcagattgtc
gggcgttactttatggaacaagaatactcctacgtcgttcctgatgattcacgcattagt
caagatgtcttgattcccaaagagcatcgctgcggcgcgcgaatggggaacgtagtagtg
attgaaattaccgatcgtgccactcgttctcgtggaatgatggggaaaattgttgaagta
ctgggcgaaaatatggcgccgggtatggaaacacagattgctatccgcacacaccagatc
ccggatgtgtggccagaagaggtcgaaaaacaaatcgctggtttaggtgaacatgttcct
gaagatgctaagaaaggtcgtgttgatttacgtgagctccccttagttactattgatggt
gaagacgcgcgagactttgatgacgctgtattttgtgaagcgaagcgcggcggaggatgg
cgcttatgggtcgccattgcagatgtcagctactacgttcgccctgatactgcgttggat
aaagaagccatcaatcgtggtaactccgtgtacttcccgtctcaggttgttcctatgctc
cctgaagtcttgtctaacggactgtgctcattaaacccacaagtggaccgcttgtgcatg
gtgtgtgaaatgaccatctcggcatccggtcggttatccggctacaagcactacgaagca
gtgatgaactcacatgctcgcctgacctacaacaaagtcagcgccatccttgaaggtgat
gaagaactgcgccagcgatacgagcctttggtgcctcatcttgaagaacttcacaagatg
tacggtgtgctgaagcagtcgcgtgataaccgtggtgctattgagtttgaaaccgttgaa
gcgaaatttattttcaactccgaccgcaagattgaccgtatcgaaccagttgttcgtaac
gatgcgcacaagatcatcgaagagtgtatgattttagccaacattgcgtcggcatcttta
gttgaaaagctgaaagagcctgctttgttccgtatacacgaaactccgggagaagagcgt
ttacaaggcttccgtgatttcttgggagagcttggattaaacctgactggtgggctggaa
ccttccccaactgattatgcgaacttaatgaagcagattggagagcgtcaggacaaagag
ctgattcagaccatgttgctgcgttcaatgaaacaggcggtgtacaacgctgacaatgtt
ggtcactttggtctggcgttaaaacgctacgcgcactttacttcgccgattcgccgttat
cctgatttgctgctgcaccgcgcgattaaatacctgatcgcaaaagaggacggtcgaaat
acggatcgctggacgccaacgggcggtttccattactcctttgatgatatggatgtctat
ggcgagcagtgttcgatgacggaacgccgcgcagacgatgcgactcgtgaagttgctgac
tggctgaagtgtgaatacatgcaagaccatgttggtgaagaactggatggtgtgattgct
aacgtaaccggttttggtttctttgttcgcctgacagagcttcacattgacggtctggtt
catatttcttcactggctaacgattactatcaatttgatcctattggtcaaaggcttatc
ggtgagagtttcggaaacatctatcgcttgggtgatgcggttaaagtgaaggtgctgtcg
gtcaatctcgatgatcgtcaaatagactttgaattagtggaaacaagtcgtaagctacgc
ggcaaaggtaagacggcgaagaagcgtgctgctcaggcagataagaaagcggcgactaaa
aagaaagctgcaatcaaagcgcgaaagcctggtggaaaggcaaaagcccttgtagaaccc
accaaacgaccagatggctccagtgagccggctaaaacacgcaagaagaccaaggctgaa
aaggcgcgtaagaaaaaatcacgcacaaagaaccgaaagtctcaaggcaagaagaagtaa
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