KEGG   Vibrio nigripulchritudo: VIBNI_A3218
Entry
VIBNI_A3218       CDS       T02871                                 
Symbol
hfq
Name
(GenBank) Protein hfq
  KO
K03666  host factor-I protein
Organism
vni  Vibrio nigripulchritudo
Pathway
vni02024  Quorum sensing
vni03018  RNA degradation
vni05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vni00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VIBNI_A3218 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    VIBNI_A3218 (hfq)
   05111 Biofilm formation - Vibrio cholerae
    VIBNI_A3218 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vni03019]
    VIBNI_A3218 (hfq)
   03036 Chromosome and associated proteins [BR:vni03036]
    VIBNI_A3218 (hfq)
Messenger RNA biogenesis [BR:vni03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     VIBNI_A3218 (hfq)
Chromosome and associated proteins [BR:vni03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    VIBNI_A3218 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: CCO59231
UniProt: U4K1V9
LinkDB
Position
1:complement(3392466..3392732)
AA seq 88 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVNQMVYKHAIS
TVVPARAVTHHSNNERSPSERPQEKSED
NT seq 267 nt   +upstreamnt  +downstreamnt
atggctaaggggcagtctttacaagacccatttctaaatgcgctacgtcgtgagcgtgta
cctgtgtctatttatctggtgaacggtatcaaacttcaaggacaaatcgagtctttcgat
cagttcgtgatcttattgaaaaacactgtaaaccaaatggtatataagcatgctatttct
actgtggttcctgctcgcgcagtgactcaccacagtaacaatgaacgttctccttcagag
cgtccacaagagaaatctgaagattaa

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