Vibrio nigripulchritudo: VIBNI_A3218
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Entry
VIBNI_A3218 CDS
T02871
Symbol
hfq
Name
(GenBank) Protein hfq
KO
K03666
host factor-I protein
Organism
vni
Vibrio nigripulchritudo
Pathway
vni02024
Quorum sensing
vni03018
RNA degradation
vni05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vni00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VIBNI_A3218 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
VIBNI_A3218 (hfq)
05111 Biofilm formation - Vibrio cholerae
VIBNI_A3218 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vni03019
]
VIBNI_A3218 (hfq)
03036 Chromosome and associated proteins [BR:
vni03036
]
VIBNI_A3218 (hfq)
Messenger RNA biogenesis [BR:
vni03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
VIBNI_A3218 (hfq)
Chromosome and associated proteins [BR:
vni03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
VIBNI_A3218 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
CCO59231
UniProt:
U4K1V9
LinkDB
All DBs
Position
1:complement(3392466..3392732)
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AA seq
88 aa
AA seq
DB search
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVNQMVYKHAIS
TVVPARAVTHHSNNERSPSERPQEKSED
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
atggctaaggggcagtctttacaagacccatttctaaatgcgctacgtcgtgagcgtgta
cctgtgtctatttatctggtgaacggtatcaaacttcaaggacaaatcgagtctttcgat
cagttcgtgatcttattgaaaaacactgtaaaccaaatggtatataagcatgctatttct
actgtggttcctgctcgcgcagtgactcaccacagtaacaatgaacgttctccttcagag
cgtccacaagagaaatctgaagattaa
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