Vibrio nigripulchritudo: VIBNI_A3404
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Entry
VIBNI_A3404 CDS
T02871
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
vni
Vibrio nigripulchritudo
Pathway
vni03030
DNA replication
vni03410
Base excision repair
vni03420
Nucleotide excision repair
vni03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vni00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VIBNI_A3404 (polA)
03410 Base excision repair
VIBNI_A3404 (polA)
03420 Nucleotide excision repair
VIBNI_A3404 (polA)
03440 Homologous recombination
VIBNI_A3404 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vni03032
]
VIBNI_A3404 (polA)
03400 DNA repair and recombination proteins [BR:
vni03400
]
VIBNI_A3404 (polA)
Enzymes [BR:
vni01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VIBNI_A3404 (polA)
DNA replication proteins [BR:
vni03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VIBNI_A3404 (polA)
DNA repair and recombination proteins [BR:
vni03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
VIBNI_A3404 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VIBNI_A3404 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Obc1_cap
Motif
Other DBs
NCBI-ProteinID:
CCO59393
UniProt:
U4KFE0
LinkDB
All DBs
Position
1:complement(3583059..3585848)
Genome browser
AA seq
929 aa
AA seq
DB search
MATIPDNPLILIDGSSYLYRAFHAYPGTMSNGDIPTNAVYGVVNMLRSMMRQFSSERIAV
VFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLYEVIKAMGLPLICVPGVEADDVIGT
LAAQASKAGMPVLISTGDKDMAQLVDENVTLINTMTNVVMDREGVVDKFGIPPELIIDYL
ALMGDKVDNIPGVPGVGDKTATALLQGVGGLDKLYDNLDDIAPLGFRGSKTMAKKLVDNK
DNAYLSYELATIKLDVELDVTAEGLKKETPNKDELIKLYGQLVFKSWLNELLEGGTGEVE
AIGSASSNAASGTTAAEVDTSAVKIDRSQYDTVLTKESFNEWLEKLKASDLFAFDTETDS
LDYMVANLVGLSFATEEGVAAYVPVAHDYLDAPEQLDRDWVLEQLKPILEDANQAKVGQN
LKYDASILARYDIELRGIKHDTMLASYVFNSVGGKHDMDSLALRFLQHSCMSFESIAGKG
KNQLTFNQIDLAEASPYAAEDADVTLRLHNRIYANIEQDEKLSHIYNDVEVPLVPVLSRI
ERTGVIIDDMLLGAQSQEIAARLDELEQKAYDIAEQEFNLSSPKQLQAILFEKMGLPVLK
KTPSGAPSTNEEVLQDLALDYPLPKVILEYRGLAKLKSTYTDKLPKMINPTTGRVHTSYH
QAVTATGRFSSTDPNLQNIPIRNDEGRRIRQAFVAPHGWKILAVDYSQIELRIMAHLSGD
KALLDAFSQGKDIHSATAAEVMGVNIEDVTTEQRRRAKAVNFGLIYGMSAFGLAKQLGIP
RGEAQGYMDKYFERYPGVMQYMEDTRSTASEQGYVETIFGRRLHLPEIKSRNGMRRKAAE
RAAINAPMQGTAADIIKKAMLLVDEWIQAEGEGKVKLLMQVHDELVFEVEESVLSEVESK
VQKLMESAAELNVPLVAEAGHGDNWDQAH
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccatacctgacaaccctttgattctcatcgatggctcttcttatctttaccgg
gcatttcatgcataccccggcaccatgagcaatggcgatatcccaaccaatgcggtttat
ggcgtggtgaatatgctgcgcagcatgatgcgtcagttcagctctgaacgaatcgcggtt
gtttttgatgcaaaaggcaaaaccttccgtgatgatatgtacccagagtacaaagccaac
cgccctccaatgcctgacgacctgcgttgtcagattgagcctttgtacgaggtaatcaaa
gccatggggcttccacttatctgtgtaccgggcgttgaagcggacgatgtcattggtacg
cttgccgctcaggcttcaaaagcgggtatgccagtgctgatcagtaccggtgataaagac
atggctcagttagtggatgaaaatgtcactctgatcaacaccatgaccaacgtcgttatg
gatagagaaggcgttgtagacaagtttggtatcccaccagagcttatcatcgactacctt
gcgcttatgggtgacaaagtggataacattccaggtgtacctggagtgggcgataaaacc
gcgaccgcgctgcttcaaggtgtgggtggtttagataagctttatgacaatctcgacgac
attgcaccacttggtttccgtggttcgaaaaccatggcgaagaagctggttgataacaaa
gacaatgcttacctttcttacgagctggcaaccatcaagttagatgtagaattggacgtc
acagcggaaggtctgaaaaaagaaacgccaaataaagatgaactaatcaagctttacggt
caactggtgtttaaatcttggctgaatgagttgctagagggcggcactggtgaagttgaa
gctatcggatctgcgagttctaatgcggcgtccggcactaccgcagcagaagtggacacc
agtgcagtaaaaatcgatcgcagccaatacgacaccgttctcaccaaagaaagctttaat
gagtggctggaaaagctgaaagcgtcggacttatttgcgtttgataccgaaacggacagt
ctggactacatggtcgcaaaccttgtcggcctgtcttttgcgaccgaagaaggtgtcgcg
gcttatgtacctgtcgcgcatgactatctcgatgcgccagaacaactggacagagattgg
gtgctggagcaactcaaaccgattctggaagacgcgaatcaagctaaagttggtcagaat
cttaagtacgatgccagcattcttgcgcgttatgacattgaactgcgtggcattaaacac
gacaccatgctggcttcctatgttttcaatagcgtaggcggcaagcacgatatggacagt
ttggcgctgcgattccttcagcacagctgcatgtcctttgaatcaatcgcaggtaaaggc
aaaaaccagctcaccttcaatcaaattgatctggcggaagcgtcaccatatgccgcagaa
gatgccgatgtcacactgcgtttgcataaccgtatttacgccaatatcgagcaggacgaa
aaacttagccacatctacaacgacgtggaagtgcctctggtacctgtactttctcgtatc
gaacgcactggtgtcatcatcgatgacatgttgctgggtgcgcaatctcaagaaattgca
gcacgcctcgacgagcttgaacaaaaagcgtatgacattgcagaacaagagttcaacctg
agttctcctaaacaacttcaagccattttgtttgaaaaaatgggattaccagtactgaag
aaaacgccatcaggtgcaccttcgaccaatgaagaagtattgcaggatctcgcattggac
tacccattaccgaaggtgattctggaataccgtggactggcaaaactgaaatcgacttac
accgataagctgccgaagatgattaacccgactacaggtcgtgtgcatacgtcttatcat
caggcagttactgcaacaggtcgcttctcgtccactgatccaaatctacagaacattcca
attcgtaacgacgaaggtcgtcgtattcgtcaggcatttgttgcgccgcacggctggaag
attctggcagtcgattactctcaaatcgagcttcgtattatggcgcacctgtctggtgat
aaagccttattagatgcgttcagccaaggtaaggacattcactcagcgaccgctgcggaa
gtcatgggtgtgaatattgaagatgtgaccactgaacaacgtcgtcgtgcgaaagcggtt
aacttcggtttgatctacggtatgagtgcgtttggtttagcgaagcagttaggtattcct
cgtggcgaagctcagggttacatggacaaatacttcgagcgctacccaggtgtgatgcag
tatatggaagacacacgcagcacagcgtctgagcaaggttatgtagagaccatctttggt
cgtcgactgcaccttccagagatcaagtcgcgaaatgggatgcgtcgtaaggcggctgaa
cgtgcggcaatcaatgcgcctatgcagggcacagcagctgacatcattaagaaagctatg
ctgctggtcgatgagtggattcaggcagaaggcgagggcaaagtgaaactgctgatgcag
gtgcacgatgaactggtttttgaagttgaggagtcagtcctttccgaagttgaaagtaaa
gtacaaaaactgatggaatctgccgcagagctaaatgtgcctttggttgccgaagccggg
catggcgacaactgggatcaagcccactag
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