Vibrio nigripulchritudo: VIBNI_A3799
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Entry
VIBNI_A3799 CDS
T02871
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase recQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vni
Vibrio nigripulchritudo
Pathway
vni03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vni00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VIBNI_A3799 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vni03019
]
VIBNI_A3799 (recQ)
03400 DNA repair and recombination proteins [BR:
vni03400
]
VIBNI_A3799 (recQ)
Enzymes [BR:
vni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VIBNI_A3799 (recQ)
Messenger RNA biogenesis [BR:
vni03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VIBNI_A3799 (recQ)
DNA repair and recombination proteins [BR:
vni03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VIBNI_A3799 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
T4SS-DNA_transf
Motif
Other DBs
NCBI-ProteinID:
CCO59755
UniProt:
U4KAH5
LinkDB
All DBs
Position
1:complement(4011805..4013643)
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AA seq
612 aa
AA seq
DB search
MSDSATVQPAEPKIDDAVKVLNEVFGYQSFRVGQEEVIQSSLEGKDSLVIMPTGGGKSLC
YQIPALVKEGVTLVVSPLISLMKDQVDQLKANGVAAECINSTMERDELIKVYNRMNAGQL
KLVYVSPERVLTRDFMERLEHLRLSMIAVDEAHCISQWGHDFRREYAALGELKQRFPYAP
IMALTATADEATRKDIVSRLHLEEPLEYLGSFDRPNIRYNLVEKHKPVSQVIRFLATQQG
QCGVIYCGSRKKVEMLTEKLCNNHIRAAGYHAGMDADERAYVQDAFQKDDIQVVVATVAF
GMGINKPNVRFVLHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKD
DGPQKQVEAHKLNAMSAFAEAQTCRRQVLLNYFGEYSEKPCGNCDICLDPPKHFDGMEAA
QKALSCVYRVNQSFGMGYVVEVLRGMQNIRVRENGHDKLSTYGIGREHSHDYWVSIIRQL
IHKGLLTQNITRNSTLQLTEEARPVLRGEQPLELAVPRLDTAAKSAKSDKLINKHYDKKL
FAKLRKLRKSIADEDGLPPYVVFSDATLIDMADILPTSYGEMLAVNGVGQRKLEKYADPF
LDLIQEHITHNG
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgtccgactccgctacagttcagcctgccgagcccaaaattgatgatgccgtcaaggta
ttgaatgaggtctttggctaccagtctttccgagtcggtcaggaagaggtgattcagtct
tcattagagggcaaagacagcttagtcatcatgcctactggtgggggtaagtcgctttgt
tatcagattcctgctctggtcaaagaaggcgtgacccttgtggtttcccctctgatttct
ctgatgaaagatcaggtcgaccagctaaaagccaatggcgttgccgctgagtgcatcaac
tcgaccatggagcgagatgaactgatcaaagtctacaatcgcatgaatgccggtcagttg
aagttggtttatgtttcgccagagcgcgtattgactcgcgacttcatggaaaggcttgaa
cacctcaggttatcgatgatcgcagtggacgaggcgcattgtatttcccaatggggtcat
gactttcgccgtgaatacgccgcgttaggcgaactgaaacagcgctttccttatgcccct
atcatggcactgaccgcgactgctgatgaagcgacgcgaaaagacatcgtctcccgtctt
caccttgaagagcctcttgaatacttaggcagttttgaccgcccgaatatccgctataac
ctagtggaaaaacacaaaccggtttctcaggtcattcgctttcttgcgactcagcaaggg
cagtgtggcgttatctactgcggcagccgcaagaaagtagaaatgctaacggaaaagttg
tgcaacaatcacattcgtgccgcaggttaccatgcaggtatggatgcggatgagcgcgcc
tacgtacaagacgcattccagaaagacgacattcaggtcgttgtggcaacagtggcattc
gggatgggcatcaataaacccaacgttcgcttcgtgctgcacttcgatattccgcgaaac
atcgaatcctattatcaggaaaccggcagagcagggcgcgatggtttacctgctgaagcc
atgatgctttacgacccagctgacattagctggctgcgccgaatgttggatgaaaaagac
gacggaccgcaaaagcaggtcgaagcccataagctcaacgccatgagtgcatttgccgaa
gcgcagacctgtcgtcgccaggtattgctgaactacttcggtgagtacagcgagaagcct
tgtggcaactgtgacatctgccttgaccctcccaaacactttgatggaatggaagcggcg
caaaaagcgttgtcttgcgtttaccgggtaaaccaaagcttcggcatgggctacgtggtg
gaagtccttcgcggaatgcagaacatccgagtgcgagaaaatggtcacgacaagctgtcg
acttatggtattgggcgcgagcacagccacgattactgggtgagtatcattcgccagctc
attcataaaggactgctaacccaaaacatcacccgaaattcaaccttgcagctcaccgaa
gaagcgcgtccggtactgcgtggtgaacagccgctggaactcgcggtgccaaggttagat
acggcggcgaaaagcgccaagtccgacaagcttatcaacaaacactacgacaaaaagctg
tttgctaagttacgtaaacttcgcaagtccattgcggatgaagacggcttgcctccttat
gtggtgttcagtgatgccacacttattgatatggcggacatcttacccacctcatacggc
gagatgctggcagtaaatggggtcggacagcgcaagctggagaaatacgccgatccattt
ctcgatttaattcaggagcacattacccacaatggctga
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