Vibrio nigripulchritudo: VIBNI_B0937
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Entry
VIBNI_B0937 CDS
T02871
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase rhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vni
Vibrio nigripulchritudo
Pathway
vni03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vni00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VIBNI_B0937 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vni03019
]
VIBNI_B0937 (rhlE)
Enzymes [BR:
vni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VIBNI_B0937 (rhlE)
Messenger RNA biogenesis [BR:
vni03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VIBNI_B0937 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
AAA_19
CMS1
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
CCO60719
UniProt:
U4KGW0
LinkDB
All DBs
Position
2:960464..961753
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AA seq
429 aa
AA seq
DB search
MSFSSQGFAPEVAKALTEIGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPVI
QHLLDSGKSPSKGTARGLILAPTRELAAQIADNIKAYTKYTDLNVAAVYGGNKMSSQVRQ
LEKGVDILVATPGRLSEHMSEGNVSVANLEFLVFDEADRILDMGFINAVREIMMEVETAP
QIMMFSATTSSQLNQLASDILRKPKRISVDSENSTAATVAHVVYPVDQERKTELLSELIG
RKNWQQVLVFVNYKETANEIVKELKLDGIKAVLCHGDKAQSARRRALDEFKEGKARVMVA
TDVAARGLDIESLPHVINYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVSREEELTLVQVE
NLIKQRIRRVEQPGYEPKRRDAYVQKLNSKDAFKHRRGRTNNPDEPKDQASAERRLSMMN
RIKARRGKN
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgtcattttcttctcaaggtttcgctcctgaagtagcgaaagcacttactgaaatcggt
tacgaaaaacttacccctattcagcaaaaagccattcctatggcgcgaaaagggcacgat
atttttgcaactgctcaaacaggaacaggtaaaacggctgcattctctttgcctgtgatt
cagcaccttctggattctggcaagtcgccatcaaaaggcaccgcacgtgggcttattctg
gctccgactcgcgaactggctgcgcagattgccgataacatcaaggcatacaccaaatac
acagatctcaatgttgccgcggtgtacggcggtaacaaaatgtcttcacaggttcgtcag
cttgaaaagggtgtcgatattctggttgcaacaccgggtcgtttgagcgaacacatgagt
gaaggcaatgtgtcggttgcaaaccttgagttccttgtatttgatgaagctgaccgaatc
cttgatatgggcttcattaacgcggtacgtgaaatcatgatggaagtcgaaactgcacca
caaatcatgatgttctctgcaacaacgtctagtcagcttaatcagcttgcaagcgacatt
cttcgtaagccaaagcgcattagcgtagacagcgagaattcaacggcagcgacggttgca
cacgttgtatacccagtggatcaggaacgtaaaacagaactgctttctgaattgattggt
cgcaaaaactggcaacaggtgctggtgtttgtgaactacaaagaaaccgcaaacgagatc
gttaaagaactgaaactcgatggtattaaagcggtactttgccatggtgataaagcgcaa
agtgctcgtcgccgtgcgttagatgagtttaaagaaggtaaagcgcgagtgatggttgca
acagacgttgctgctcgtggtctcgatattgaaagcctgcctcatgtaatcaactacgac
atgccattccttgcggaagactatgtacaccgtattggtcgtacaggtcgcgctggcaaa
caagggcatgcggtttcttttgtaagtcgtgaagaagaactgactttggttcaggtagaa
aacctaatcaaacaacgtatccgccgcgttgagcaacctggatacgagccgaaacgtcgc
gatgcttacgttcagaagcttaacagcaaagatgcgttcaaacatcgtcgcggacgcacc
aataacccagacgagccaaaagatcaggcgtctgcggagcgtcgtttgtctatgatgaat
cgaatcaaagcgcgtcgcggtaagaattaa
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