Vibrio nigripulchritudo: VIBNI_B0940
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Entry
VIBNI_B0940 CDS
T02871
Name
(GenBank) putative Ada, Adenosine deaminase domain fused with AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
vni
Vibrio nigripulchritudo
Pathway
vni03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vni00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VIBNI_B0940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vni03000
]
VIBNI_B0940
03400 DNA repair and recombination proteins [BR:
vni03400
]
VIBNI_B0940
Enzymes [BR:
vni01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
VIBNI_B0940
Transcription factors [BR:
vni03000
]
Prokaryotic type
Helix-turn-helix
AraC family
VIBNI_B0940
DNA repair and recombination proteins [BR:
vni03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
VIBNI_B0940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
Motif
Other DBs
NCBI-ProteinID:
CCO60722
UniProt:
U4K602
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All DBs
Position
2:964315..965679
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AA seq
454 aa
AA seq
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MDIQPLTIEECKKARMARDHRFDGRFFVAVKTTGIFCRPICPANLPQEKNVTYYFDQAQA
LQAGYRPCLRCRPDSAPSSWAWKGAETSFQRAIKLIEQGALQTHGITGLSDRLGISDRYL
RKLFDKYLGMSPKQYAQYHQLMFAKQLLHESSVSVSDIAFASGFNSVRRFNDAFKTLLKL
TPSQVRKSEDMEAQTNQVRLGFKVPLHWEHMLSFYRMRAIHGVEDVGNNFYARHFELNGH
KGWFKASVESKQLMQVEFELEEITDLKPLVLKLRRMFDLDVNISEVEQHLSKAAPTLVQE
SGIRIPGVWSPWEAGVRAILGQQVSVKAAIGQLNLLVSTLNGSSDKLYFPTPEQVAEADL
SFLKMPNSRKETLHRFAHYTVEHPDADPKEWIEIKGVGPWTINYAQLRGQSLTDCFLSGD
LVVKKAMEHHPDMTQENVAPWGSYATLHCWNTPL
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atggacattcagcccttaaccatcgaagagtgtaagaaagccagaatggcacgggaccat
cgatttgacggtcgattttttgtggccgtgaaaactactggcatattctgccgcccaatt
tgtcctgcgaatctgcctcaagagaagaacgtgacttattacttcgatcaggcacaggcg
ctacaggctggatatcgcccttgccttcgttgccgaccggatagcgcacccagttcatgg
gcatggaaaggcgcagaaacgtctttccagagagcaatcaaactgatcgagcaaggcgcg
ttgcaaacccacggtattacagggctttcagatcggttaggcatatcagatcggtatctg
cggaagctttttgataagtatctgggcatgtcaccaaaacaatatgcccagtatcatcag
ttgatgttcgctaagcaattgctgcacgaaagctctgtgagtgtcagtgatatcgctttt
gccagtgggtttaacagtgttcgacgttttaacgatgcatttaaaacgctgctaaaactt
accccgtcacaagtgagaaaatcagaagacatggaagcacaaaccaatcaggttcggctg
ggttttaaagtcccgctgcattgggagcatatgctcagtttctaccgcatgcgggcaatt
cacggagtcgaagacgtcggtaataatttctatgcccgtcattttgaactcaatggtcac
aagggctggtttaaggcgtcggtagaatccaagcagctcatgcaggttgagtttgaattg
gaagagattacagacttaaagccgttggtgctgaagctaagaagaatgttcgatctggat
gtcaacatatcggaagttgagcaacaccttagcaaagcagccccaaccttggttcaggaa
tcgggcattcgaattcctggagtctggagcccctgggaagcaggcgttcgcgcaatttta
ggacaacaggtatctgtgaaagcggctattggtcagctaaaccttctggtttcaacgttg
aatggcagctctgacaagttatattttcccacgccagaacaagttgcagaggcggatctt
agttttctgaaaatgccgaatagccgaaaagaaactctacatcgatttgcccactacact
gttgaacaccccgatgccgaccctaaagagtggatcgagataaaaggggtaggaccttgg
acaattaactatgcccagttaagagggcaatcactgaccgactgttttttatctggagat
ctggtggttaaaaaagcgatggaacaccatccggatatgacgcaagaaaatgttgcccct
tggggaagttacgctaccttacattgctggaatacaccattatga
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