Vibrio nigripulchritudo: VIBNI_B1076
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Entry
VIBNI_B1076 CDS
T02871
Symbol
rnb
Name
(GenBank) Exoribonuclease 2
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vni
Vibrio nigripulchritudo
Brite
KEGG Orthology (KO) [BR:
vni00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vni03016
]
VIBNI_B1076 (rnb)
Enzymes [BR:
vni01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
VIBNI_B1076 (rnb)
Transfer RNA biogenesis [BR:
vni03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
VIBNI_B1076 (rnb)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
DUF7716
Cmr2_Zn-bd
Motif
Other DBs
NCBI-ProteinID:
CCO60849
UniProt:
U4KH13
LinkDB
All DBs
Position
2:complement(1102609..1104579)
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AA seq
656 aa
AA seq
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MFQDNPLLAQLKQQIKETLPTKEGTIKATDKGFGFLEVDSKTSFFIPPPYMKKCMHGDKV
EAIIRTENEKEVAEPDKLIEPSLTRFIGRIKMFKGRLNVVPDHPQLKKLSLKAKAKKGLN
PETLSEGDWVVAHLTRHPLKGDNTFFVEISEKITDANDKIAPWWVTLAENDLPNSEPAGI
DNWELKDDGDLERVDMTSVPFVTIDGESTKDMDDALFAKKNENGDFELTIAIADPTAYIT
PDDEMDKVARDRGFTIYLPGRNIPMLPRDLADDLCSLMENEVRPALCCTVTIAKDGVIGD
DIKFFAANIQSHARLVYDHVSDWLETGSSDAWQPDETIAQVVKDLHEFAQARANWREENA
VVFPDRPDYRFELSEDNDVVAIHADLRRTANRLVEESMITANICAGKALKSKFETGVFNT
HAGFKGDKMADVLELINKDNEQPFTEEQAKSLEGFSAIRRWLGNQETSYMDNRIRKYQAY
SEIGNQPLPHYAMGLDIYATWTSPIRKYGDMINHRMLKALILDKEPVQKPDDAVGEELAL
HRKHHKIAERNVGDWLYARTLINAPKDQTRFQGEIFDVNRAGARIRILENGASAFIPSSQ
ILDNKERIECNSEVGQVLIDKNVEWQLGDVLEVILIDVNLENRSLVAKPTKEFGTE
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccgttactcgcacaattaaagcagcaaataaaagaaacccttcca
acaaaagaaggcacaatcaaagccacagataaaggttttggatttctcgaagtagacagc
aaaacttcattcttcatcccacctccatacatgaaaaaatgtatgcacggtgacaaagtt
gaagccattatccgaacagaaaacgaaaaagaagtcgctgagccagataagcttattgaa
ccgtctcttactcgctttattggtcgtatcaaaatgttcaaagggcgtctgaacgttgtt
ccggaccaccctcaactgaaaaagctttccctaaaagcaaaagctaagaaaggactaaac
ccagaaacgcttagcgaaggtgactgggttgtcgcgcacctgaccagacacccgcttaaa
ggtgacaatactttctttgttgaaatttcagagaagattaccgacgcgaacgacaaaatt
gcaccttggtgggtaacgctggctgaaaacgacttaccaaacagcgagcctgcgggtatc
gataattgggaactgaaagacgatggtgacctagagcgcgttgatatgacgtctgttcct
tttgttactattgatggtgaatcaacaaaagatatggacgatgccctttttgctaagaaa
aacgaaaatggcgattttgagctaaccatcgcaattgcagatccaactgcctacatcacc
ccagatgatgaaatggacaaagtggcgcgtgatcgtggctttaccatctatctaccgggt
cgcaacatcccaatgcttccacgtgatttggcagacgatctttgttccctgatggaaaac
gaagttcgaccagccctgtgctgcacagtaaccattgcgaaggacggcgtaattggtgat
gacatcaaattcttcgcagccaacattcaatctcatgcgcgtttggtttacgaccatgtt
tccgattggctagaaacaggcagttcagacgcttggcaacctgacgaaaccattgcgcag
gtggttaaagatctccatgaattcgcacaagctcgtgcaaactggagagaagaaaatgcc
gttgttttcccagatagaccggattaccgcttcgagctgagtgaagataacgatgttgtt
gcgattcatgcggatcttcgtcgtacagcaaatcgcttggtcgaagagtccatgattacc
gctaatatctgcgcaggtaaggcacttaaaagcaagttcgaaacaggggtatttaatacc
cacgcgggttttaaaggtgacaaaatggctgatgtccttgaattgattaacaaggataac
gaacaaccatttactgaagagcaagctaagtctctggaaggattcagtgcgattcgtcgt
tggttgggtaaccaagaaacttcttacatggacaatcgcattcgcaaatatcaggcgtac
agtgaaattggtaaccaacctcttccccactacgctatgggattagacatctacgcgact
tggacttccccgattcgtaaatatggtgacatgatcaaccaccgtatgctgaaagcactg
attcttgacaaagaacctgtacaaaaaccagacgacgctgttggtgaggaactggcgctg
caccgtaagcaccataaaattgcagagcgcaatgtgggtgactggttatatgcgcgtact
ctgatcaacgctcctaaagatcaaactcgcttccagggtgaaatttttgacgtgaatcgc
gcaggtgcacgaatcagaattctggaaaatggtgcgtctgcttttataccgagctcacaa
attttagataataaagaacgcattgagtgcaacagcgaagttggtcaagtactcattgac
aagaacgtagaatggcaacttggtgatgttcttgaagttatcttgatcgatgtcaatctc
gaaaaccgcagcctggtcgcgaaaccgaccaaagaatttggaacagagtag
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