Vibrio nigripulchritudo: VIBNI_B1078
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Entry
VIBNI_B1078 CDS
T02871
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD)
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vni
Vibrio nigripulchritudo
Pathway
vni03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vni00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VIBNI_B1078 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vni03019
]
VIBNI_B1078 (deaD)
03009 Ribosome biogenesis [BR:
vni03009
]
VIBNI_B1078 (deaD)
Enzymes [BR:
vni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VIBNI_B1078 (deaD)
Messenger RNA biogenesis [BR:
vni03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VIBNI_B1078 (deaD)
Ribosome biogenesis [BR:
vni03009
]
Prokaryotic type
rRNA helicases
VIBNI_B1078 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
CMS1
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
CCO60850
UniProt:
U4KIK7
LinkDB
All DBs
Position
2:1104958..1106823
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AA seq
621 aa
AA seq
DB search
MQDSVIQFSELALNDAILSSLEGMGFVSPTPIQAAAIPHLLEGKDALGKAQTGTGKTAAF
SLPLLNKLDLSQRKPQAIVLAPTRELAIQVAAEMKNLGQNIKGLKVLEIYGGASIVDQMR
ALKSGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTWIMEQAPDT
AQRVLFSATMPPMLKNIVERFLRNPEHIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLL
ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTKSSMEEIQLPLRDKVAEARLVKLGNELTADKEHKSLDKFGELVEKLQESLEIDATT
LAAILLKRQQGKRPLFYIGEDPMIEAIERDKKRRKERREGRSSYGNNNQDWDTYQLQVGR
EQGVQVKDIVGALANELGLTKGSIGAIKLAHGHTFVQLPKAMTSEVAGKLRKLRIRQKEV
GAVVCDFDDFREPRGRRDGGRRDGGHRGNREGGGYRGNREGGRGNRGEGRGERRFDRNRG
GDHRGSHRGERAPRNRRFEEA
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgcaagattctgtaattcagtttagtgaattagcacttaatgacgccattctttcttca
cttgaaggtatgggtttcgtttctccaactccaattcaagcagctgctattcctcaccta
ttagaaggtaaggatgcacttggtaaagctcaaaccggtacaggtaaaactgccgcgttc
tctcttcctcttcttaacaagctagacctaagccaacgtaagccacaagctatcgtatta
gcaccaactcgtgagctggctattcaggttgccgctgagatgaagaacctgggtcaaaac
atcaaaggtcttaaagttctggaaatttacggtggtgcttctatcgtagatcagatgcgt
gctctaaaatctggcgcacacatcgtagtaggtacaccaggtcgtgtacaagatcttatc
aaccgcgatcgtcttcacctagacgaagttcacacgtttgttcttgatgaagcagacgaa
atgttgaacatgggcttcgtagacgacgtaacttggatcatggaacaagcaccagacaca
gcacaacgcgtgcttttctctgcaaccatgcctccaatgctgaaaaacatcgtagagcgt
ttcctacgtaatcctgagcacatcgacgttgctggtaagaaccacactgtagacaaagta
gagcagcaattctgggttgttaaaggtgtagagaaagatgaagctatgtctcgtcttctt
gaaactgaagaaactgacgcgtctatcgtattcgttcgtactcgccaagataccgagcgt
ctggctgactggttaagtgcacgtggctttaaagcggctgcgcttcacggtgacattcct
cagtctctgcgtgagcgtactgttgatcacatcaaacaaggtgttatcgatatcctggta
gcaaccgatgttgttgcacgtggtctggacgttcctcgtattacacacgtatttaactac
gacatcccattcgatgttgagtcttacatccaccgtatcggtcgtacaggtcgtgctgga
cgtaaaggtaaagcgattctgttggttcgtaccaaccaaatccgtatgcttcgcactatc
gagcgcgtaaccaagtcttctatggaagaaatccagcttccactgcgtgacaaagtcgca
gaagcgcgtctggttaagcttggtaacgagctaacagcagacaaagagcacaagtctctg
gacaaattcggcgagctggttgagaagcttcaagagtctctggaaattgatgcgacaaca
ctggcggctattcttcttaagcgccagcaaggcaaacgtcctctattctacattggcgaa
gacccaatgattgaagcgattgagcgcgacaagaagcgtcgtaaagaacgtcgcgaaggt
cgtagcagctacggcaacaacaaccaagattgggatacttaccaattgcaagttggtcgc
gagcagggcgttcaggttaaagatatcgttggtgctcttgcaaacgagcttggcttaaca
aaaggttcaatcggtgctatcaaacttgcacacggtcatacgtttgtacagcttccaaaa
gcaatgacttcagaagtggctggtaagcttcgcaaactgcgtattcgccagaaagaagtg
ggtgcagtagtgtgtgacttcgacgatttccgtgagcctcgtggtcgccgcgatggtgga
cgtcgtgatggcggtcaccgtggtaatcgcgaaggtggcggttatcgtggcaaccgtgaa
ggcggacgcggaaaccgtggtgaaggtcgtggcgagcgccgtttcgaccgtaaccgtggc
ggtgatcatcgcggtagccaccgtggtgagcgtgctccacgtaaccgtcgtttcgaagaa
gcttaa
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