Vibrio nigripulchritudo: VIBNI_B1598
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Entry
VIBNI_B1598 CDS
T02871
Name
(GenBank) putative exonuclease subunit SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
vni
Vibrio nigripulchritudo
Brite
KEGG Orthology (KO) [BR:
vni00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vni03400
]
VIBNI_B1598
DNA repair and recombination proteins [BR:
vni03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VIBNI_B1598
Archaeal homologous recombinant proteins
VIBNI_B1598
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcC_Walker_B
AAA_29
AAA_23
APG6_N
ABC_tran
AAA_21
SMC_N
DUF6317
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CCO61334
UniProt:
U4KHK8
LinkDB
All DBs
Position
2:complement(1628929..1632603)
Genome browser
AA seq
1224 aa
AA seq
DB search
MKILSLRLKNLNSLKGEWKIDFTQSPFTDNGLFAITGATGAGKTTLLDAICLAIYHKTPR
LGLLTQSSNEAMTRGESECCSEVEFEVKGKAYRAFWSMRRSHKKADGKLQAAEVELAEVE
GGKVIASQAKKKLEEVERITGLDFDRFTKSMMLSQGQFAAFLNAKESERAELLEELTGTE
IYGLISERVHQHWSESKQTLIALESRAQGVQLLDIAYRESLNEELSSLKNQHGTAKKEKE
SFDQCANWIKEKTDLAAELSQTSQSLINAETALAEAKPELDKLADAEPAEQIKPLHDKLS
DIHNTHRQYTESLESLRKQATELESECKDVDAEVKVSESALQSTKVAQQALEDLITQTVI
PLDSDISQGKQKQSSLQSEIHEKNNKKQALDASYQQLRTKLKEQSDTIAESEKFIEQNAN
LKDVAPKLEGWKVQLTALEESSRELTEIDSNLSSLGIQQAEHIEKQKKIEFELELAHSKL
KSNKEKELQLSSRHQALSGASSLEGLEAQQQAMNQQVIVTHQLQGFQERWSLVSNEQQQL
SQKMAQQESELKLRNQQRDSLREQYKSQNQLAQSLAQLVTQEEHLAVYRANLRDDQPCPL
CGSLEHPILADGAVSVPETIAQKEEAEKYLSELKRQGEALSVEIKSVEFQFSENQSKLSA
GQTELEQLQLQWNQKLPALDTTIDIVTPSSAAILTASLEEKVKASQSQISQLKAAEKALE
ESQKQTSTLSEKAVQLENQLKLETKDTQLIEKKQQDFAERKQKLEAQRLEQRQDLQSAMS
EANLKVPDQNVELWINELKDQVDAFQNKEKHLSELRHSVTLVLAEQKNLDSQQSELTDAL
NQLQKQLVETSDLLNERMAKRAEVFANKSVDDERLKAREQVTQAERSTEQIQIKHKSLKE
KQASLSGQQSSINNSLSNTVVSKSQIQSEWEQALSSSPFDTVEQFQSALLPIEEKARIQQ
LKQSLNDSITQLKAIQESANQKLSALNRHEKASEWIDFKLEDIQNQQTEAQRHLEGLTKR
EGEITQELVSDDKRREEQSSLFEEIEQYRVEYDDIQYLHSMIGSQKGDKFRKFAQGLTLD
NLIYLANKQLSRLYGRYQLQRKQGEGLELTVLDLWQGDNERDTKTLSGGESFLVSLALAL
ALSDLVSHKTSIDSLFLDEGFGTLDAQTLDIALDALDSLNASGKMIGVISHIEAMKERIP
VQLKVTKKSGLGISELAPEYRFNP
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaatactgtctctgaggcttaaaaacctgaactctttaaaaggtgaatggaagatc
gacttcactcagtcaccattcaccgacaatggtttgttcgcgattactggtgcaactggt
gcaggaaaaactacacttcttgatgcaatctgtctggcgatttatcacaaaacccctcgg
cttggtctgttaacccaatccagcaacgaagccatgaccagaggagagtctgagtgctgc
tcagaagtcgaatttgaggtcaaagggaaagcctaccgagcgttttggagcatgcgtcgt
tcacacaaaaaagcggacggcaagcttcaagctgcggaagtggaacttgcggaggtggaa
ggcggaaaagtgatcgcctcgcaagcgaagaaaaagctggaagaggtagagcgcataacc
gggctggactttgacagattcaccaaatccatgatgctgtctcaaggtcagttcgcggct
ttcctaaatgccaaagaatcagaacgtgcagagttgttagaagagttaacaggcaccgag
atctacggtcttatatcagaacgggttcaccagcattggtcagagtcaaaacaaaccttg
attgcgttagaatcaagggctcaaggcgttcaactgcttgatatagcttatcgtgaatcg
ctaaatgaagaactgtcttcgctaaaaaaccagcatggaactgcgaaaaaagagaaagag
tcctttgatcaatgcgctaactggataaaagaaaaaaccgatttggcagcggagcttagc
caaacgtcgcaatcgttgattaatgctgaaacagcacttgccgaagccaagccagagctc
gataaactggctgatgccgagcctgcagagcaaatcaaaccactgcatgacaaactttct
gacatacataatacacatcgccagtacacggaatccctagagagccttcgcaagcaggca
actgagctggagtcagaatgcaaggacgttgatgcggaagttaaggtttcagaatcggcg
ttgcaaagtactaaggtcgctcaacaggcgttagaagacctgattacacaaactgttatc
cctttggacagtgatatttcacaaggtaaacaaaagcaatcgtccttacagtctgaaatt
catgagaagaacaacaaaaagcaagcactggatgcgtcttaccaacagctcagaaccaaa
ctgaaagagcagagtgatacgatcgccgagagcgaaaaattcattgaacaaaatgcaaat
ttgaaagacgtggctccaaagctggaaggttggaaagtccagcttacagctcttgaagag
tcaagtcgcgaactgaccgagattgattcaaatctgtcgtcactcggtattcagcaagct
gagcatattgaaaagcagaaaaaaatagaatttgagttggagctggctcattcaaaactc
aaatcgaacaaagaaaaagaacttcaactaagttcaaggcatcaggctttgtctggggct
tccagccttgaagggctggaagctcaacaacaagcaatgaatcagcaagttattgttacc
catcagttacaagggtttcaggaacgctggtctttagtatctaatgagcaacagcaactg
tctcaaaaaatggctcaacaagagtctgaactgaagctgcgaaatcagcagcgagacagc
ttgcgggaacaatacaaatctcagaatcagctagctcagtcacttgctcaacttgtgaca
caggaagaacatcttgctgtctacagagccaatctgagagatgaccagccatgtccactg
tgcggcagtcttgaacatcctatacttgctgatggtgccgtatcagtgccagaaaccatt
gctcaaaaagaagaagcagaaaaatacctctctgaattaaagcgtcagggagaagctttg
tcggtcgagataaaatctgttgagttccagttttctgagaatcagagcaagctgtcggca
gggcaaacggaactggaacaactccagttgcagtggaaccagaaacttccggcactagac
acaaccattgatattgtcacgccttctagtgcagcaattttgacagcaagcctagaagaa
aaggtcaaagccagtcagtctcagatcagtcaattgaaagccgcagaaaaagctttggaa
gagtcgcagaagcagacttccacactgtcagagaaagcagtgcagcttgaaaatcagctt
aagcttgaaacgaaagacacccaattgattgagaagaaacaacaggattttgctgagcgt
aagcaaaaactggaagctcaacgcttggagcaacgtcaggatctgcaaagtgcgatgtca
gaagcgaatctgaaggttccggaccagaatgtcgaactatggattaatgagctaaaagat
caggttgacgcgtttcagaataaggaaaaacatcttagcgagcttcgtcattcggttacc
ttggtattggcagaacagaaaaatctcgattctcagcaaagtgagttaacagatgcttta
aaccagttgcaaaagcagttagtcgaaacgtcagatctgcttaatgaacgaatggcgaaa
cgagcggaagtgtttgcaaacaagtcagttgacgatgaaaggctgaaagctcgcgaacaa
gtgacacaggcagaaagaagcaccgagcagattcagattaagcacaagtctctgaaagaa
aagcaggcatctctttccgggcagcaatcatcaatcaataatagcctaagcaatactgtg
gtttcaaagagccagattcagagtgaatgggaacaagctttgtcatcgagcccctttgat
actgttgaacagttccaaagtgcgttgttaccaatcgaggaaaaagctcgcattcagcag
ctcaagcagtcgttgaatgattcgattactcaacttaaagctattcaggaaagcgccaat
cagaaactgagtgctctgaaccgccatgagaaagcgtctgaatggattgattttaagcta
gaagacattcaaaaccaacagaccgaagcccaaagacatctggaagggctgacgaaacgt
gaaggtgaaatcactcaggaactggtgtccgacgacaaaaggcgagaagagcaatcctct
ttgtttgaagaaattgaacagtaccgggttgagtatgatgacattcagtatttgcattcg
atgatcggctcccagaagggcgacaaattccgtaaatttgcccaaggtctgaccctcgat
aacctgatttatctggcgaacaaacaactttcaaggctctatggtcgatatcaattacaa
agaaaacaaggcgaagggcttgagctgacagtattggatctttggcagggcgataatgaa
agggacaccaaaacactatcgggtggggagagcttccttgtgagtcttgcactggcgctg
gcgctgtccgatctggtgagccacaaaaccagcatagactccttgttccttgatgaaggt
tttggcaccttagatgcgcaaacgctggatatcgcgctggatgcgttagacagcctgaac
gcatccggaaaaatgataggtgtcatcagccacatagaagcgatgaaagaacgcattcca
gtccagctaaaagtgaccaagaagagtggtttaggtatcagtgagttagcgcctgaatat
cgctttaacccttaa
DBGET
integrated database retrieval system
