Vibrio nigripulchritudo: VIBNI_B1623
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Entry
VIBNI_B1623 CDS
T02871
Name
(GenBank) putative DNA-binding transcriptional regulator CsgD
KO
K20918
LuxR family transcriptional regulator, positive regulator of biofilm formation
Organism
vni
Vibrio nigripulchritudo
Pathway
vni05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vni00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
VIBNI_B1623
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vni03000
]
VIBNI_B1623
Transcription factors [BR:
vni03000
]
Prokaryotic type
Helix-turn-helix
LuxR family
VIBNI_B1623
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Gene cluster
GFIT
Motif
Pfam:
GerE
VpsT-like_REC
HTH_23
HTH_40
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
CCO61357
UniProt:
U4K7P9
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All DBs
Position
2:complement(1658679..1659326)
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AA seq
215 aa
AA seq
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MDNASNKANIMFITNKNIQSNYFKSYVESHVPLTVTVVDYDGLENGLLTGQEFIALVDLS
VKDNIDWIAAVLAKSEELAAVVLLNSEQDIEFKELVKWKKLHGCFGAGDDLESVCNGLLS
ISQGENWLPRKVINQLLSFYQKNDSSYMEDEAIQVDLTRREIEILETLKTGESNIEIADK
LFISEHTIKSHLYNIFKKIEVKNRLQAMAWAKKHL
NT seq
648 nt
NT seq
+upstream
nt +downstream
nt
atggataacgcaagcaataaagctaatataatgttcattaccaacaagaatattcaaagt
aactatttcaagagttacgttgaatcgcatgtgccacttacggtgacagtggtagattat
gatggcttagaaaacggacttctcacgggacaagagttcattgcacttgtggatttgagt
gttaaggacaacattgattggatcgctgcagtattggctaaatctgaagagttggcggct
gtagtcttgcttaatagcgagcaagacattgaatttaaagagctagttaagtggaagaaa
cttcacggatgttttggtgcaggggacgacttagaaagcgtatgtaatggattgttatcc
atttctcagggagaaaactggttacccagaaaagtgattaatcaattgctgagcttttat
caaaaaaatgattcaagctacatggaagatgaagctattcaggtagacctgacccgtaga
gaaatagaaatcctggaaactttgaagacgggcgaatcaaatattgaaatcgcagataag
ttattcataagtgagcatactatcaagtcacatctctacaatatcttcaagaaaattgag
gttaaaaaccgcctacaagctatggcttgggctaaaaaacacctgtaa
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