Vibrio nigripulchritudo: VIBNI_B1961
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Entry
VIBNI_B1961 CDS
T02871
Name
(GenBank) Putative DNA helicase, UvrD/REP type
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vni
Vibrio nigripulchritudo
Pathway
vni03420
Nucleotide excision repair
vni03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vni00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VIBNI_B1961
03430 Mismatch repair
VIBNI_B1961
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vni03400
]
VIBNI_B1961
Enzymes [BR:
vni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VIBNI_B1961
DNA repair and recombination proteins [BR:
vni03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VIBNI_B1961
MMR (mismatch excision repair)
Other MMR factors
VIBNI_B1961
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
PDDEXK_1
AAA_19
UvrD_C
UvrD_C_2
Cas_Cas4
AAA_30
AAA_11
AAA_22
Dna2
ResIII
DEAD
Motif
Other DBs
NCBI-ProteinID:
CCO61674
UniProt:
U4K1W9
LinkDB
All DBs
Position
2:2001129..2003999
Genome browser
AA seq
956 aa
AA seq
DB search
MSLANPSQEIAIHHHEGPLLIIAGPGSGKTYTLVERIMNLIRVHGAKPEQLLVVTFTEKA
AQELKTRIANRLLELGSDFNVNEMYLGTFHSICLRILEEYRDFTRLKRSFVLMDQFDQQY
FLYQNLREFKDIDGIEHICGEHKIPAWAKSENLLGWLNKTSEEVLDIDRLCSSPDEAICA
LGESYRIYQGLLQKHNALDFSCIQLETLVLLKENPHVLSELVAKLEYLMVDEYQDTNTIQ
EQLLKLLMGEKHNLCVVGDDDQALYRFRGASVRNILEFPQQFAPNECQQVKLSVNYRSHP
DIVGFYDTYMGDQAWFSEGVNYRYPKTIAPCDNDFKEGPTVVSAITPEGDDWHNDVYQML
IHLKQNGKLTDWNQVAFLFRSVKSDKVKALAQSLEENGVPVYSPRANLFFEREEVRYLIG
ALHMVFPMVMVERKKKMAEGRRLPIWDYYENYCIKPFMQQLKEPEQTELLEWCKRKAKYH
IGLNKNADSSFLSLLYELLQFPLFSTYLDQENGNERAQRNLAQLSRMLGKFEYLHHVSVL
NPKYLEKNLISLFDNFLKFLYEGGIDEYEDMSEYAPSGCVSFLTIHQSKGLEFPIVFVGS
LEGTPHKQYGDLDEIIEHQYMGKPPFEPLEDTKYFDFWRLYYTAFSRPQNLLVLTGQEKN
GHGKTPSRYFTDYTSKLPHWRSVKHHLTEIEFEQVKDVNIKNEYAFTSHITLFETCAEQY
RLFKDLEFQPVKASPMLFGTLIHETLEDVHKVAIRGEVEKLTKENIENWLLDNYQNLANR
ERMYLGESTLGAALKHVMRYVNRKGSDWSDIKETEVDISLVKDSYVLTGSVDLIKGEGDT
VEIVDFKSERKPNMEKDRDRIKHHQRQLEVYAHLVEQNTGHKVSRMHLYFTGETNGLPTI
SFNKNTSAIEHTIEDFDRIVGKIESKDYSLKARPDKTCVDCSARAYCDRKNWKFCG
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atgtcactggcgaacccatctcaagaaatagcaatacaccatcacgaaggacctcttctg
atcattgcaggtcctggctcaggtaaaacctatactctggttgaacgaattatgaatctt
attcgagttcatggtgcgaaaccagagcagctattagttgtaacattcactgaaaaagca
gctcaggaactaaaaacacgaatagctaaccgtctattggagctcggctctgattttaac
gtgaatgaaatgtacctcggtacgtttcactctatttgcttaagaatcctcgaagagtac
cgcgatttcactcggttgaagcgcagttttgttctgatggaccaattcgatcagcagtat
tttctttatcaaaatctccgtgaatttaaagatattgacggaattgaacatatctgcgga
gaacataagatccctgcgtgggcaaaatcagaaaatttgctcggatggctgaacaagact
tctgaagaagttctggatattgataggctttgtagttctccagacgaggcaatatgcgca
ttaggtgaaagctatcgtatttatcaaggtttgctacaaaaacacaacgcactcgacttt
tcatgtatccagcttgaaaccttagtactactgaaagagaaccctcatgttctatctgaa
ctagtggcaaagttagaatacttgatggtcgatgaataccaggataccaatacgattcag
gagcaactcctcaagcttctcatgggcgaaaaacataacttgtgtgtcgttggcgatgat
gaccaagctctttatcgttttcgaggggctagtgtgcgtaatattctcgagtttccgcaa
caattcgcaccaaatgaatgtcagcaggtaaaactctctgtaaactatcgttcccatcct
gacattgttggcttttatgacacttatatgggagatcaagcgtggttttctgaaggtgtt
aactaccgatatcccaaaacgatagccccttgtgataatgattttaaagagggtccaacc
gttgttagtgctatcactcctgaaggtgatgattggcataatgatgtgtatcagatgctg
attcacctgaaacaaaatggaaagttaacggattggaatcaagtcgcctttttatttcgt
tcggttaaatcggataaggttaaagctctcgcacaatcattagaagagaatggagttccg
gtatattcaccacgtgcgaacctgttttttgagcgagaagaagtgcgctatctgataggg
gcgcttcatatggtttttcccatggtgatggttgagcgaaagaaaaaaatggccgaaggt
cgtcgtttacctatatgggactactacgaaaattactgtatcaaaccatttatgcagcaa
ctcaaagaaccagagcagactgagttgctcgaatggtgtaaaagaaaggctaaatatcac
attggcctaaataaaaacgccgactcatcttttctctcccttctgtatgagctattgcag
ttccctttattttcaacttatcttgatcaagagaatgggaatgagcgagcgcaacgcaat
ttggcacaacttagccgaatgctcggaaagtttgagtacctacatcatgtcagtgttctt
aaccctaagtatctagagaagaacctcatttctcttttcgataactttctgaaattcttg
tatgaaggcggtatcgatgagtatgaagatatgtctgagtatgccccgtctggttgcgta
tcatttctgactattcaccagtctaaaggccttgaatttccaattgtctttgtcggttca
ttagaaggaacaccgcataagcagtatggtgatctggatgaaataatagagcatcagtac
atgggtaaacctccattcgagccattagaagatacaaaatatttcgacttctggcgtttg
tactacactgctttttctcgtcctcaaaatttattagtgctgaccggccaagagaaaaat
ggtcacggtaagacaccgtctcgatactttaccgactatacaagcaaactaccgcattgg
cggagcgtgaaacatcacttaactgaaatcgaatttgagcaagtgaaagatgtgaacatc
aaaaacgagtacgcctttacgtctcatatcacgctatttgagacgtgtgctgaacagtat
cgattatttaaagatcttgagttccagccggttaaagcaagccctatgttatttggtacc
ttgattcatgaaactctagaagatgtgcacaaagttgccattcgaggggaagttgaaaag
ctgactaaagagaatattgaaaactggcttctagataactatcagaatctggcaaacaga
gagcggatgtatctgggcgaatcgactttaggagcggcgctcaagcatgtaatgcgctat
gtgaaccgtaaaggaagtgattggtctgatatcaaagaaactgaagtggatatttcgttg
gtaaaggatagctatgtgctcactggaagtgtcgatttgatcaaaggtgaaggtgatacc
gttgaaattgtcgatttcaagtcagaacgtaaaccgaatatggaaaaagaccgtgatcgt
attaagcaccatcagcgccaactggaagtgtatgcacatttagtcgagcaaaatacagga
cataaagtaagcagaatgcacctgtactttactggagaaactaatgggttaccgacaatc
agttttaacaaaaacacttctgctattgagcataccatcgaggattttgatagaatcgtc
ggcaagattgaaagcaaggattactcgcttaaggcgcggccggacaaaacatgtgtagac
tgcagcgctagggcgtattgcgaccgaaaaaattggaaattttgtggctaa
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