Veillonella nakazawae: VEIT17_13540
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Entry
VEIT17_13540 CDS
T06972
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vnk
Veillonella nakazawae
Pathway
vnk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vnk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VEIT17_13540 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vnk03019
]
VEIT17_13540 (cshA)
03009 Ribosome biogenesis [BR:
vnk03009
]
VEIT17_13540 (cshA)
Enzymes [BR:
vnk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VEIT17_13540 (cshA)
Messenger RNA biogenesis [BR:
vnk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VEIT17_13540 (cshA)
Ribosome biogenesis [BR:
vnk03009
]
Prokaryotic type
rRNA helicases
VEIT17_13540 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Helicase_RecD
CobA_CobO_BtuR
CMS1
Motif
Other DBs
NCBI-ProteinID:
BBU34908
LinkDB
All DBs
Position
complement(1513775..1515340)
Genome browser
AA seq
521 aa
AA seq
DB search
MLEKFEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLP
VLERVDGNERHVQVVILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKK
NPQIIVATPGRLMDHMDRGSIHFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTL
LFSATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCRLFDIQT
PELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATDV
AARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREMEHLHAIERLT
KRKIARRRAPSLGEVLEGQQRLAIESLVEMTDNLEALAPFKSSAEELLNDTDSVTLLAAA
LKLLTKEPDTTPVNITEEKPLRVRRRREGGRSDRRRGDRRRDGDRRRDGDRRRDDRPRRS
RDDRRGERRDDRRRDDRRSDRPRGDRKPRHQGEGFKPYFKD
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgttagaaaaatttgaacaattaatgattagcgaacctgttctaagagcgttaaatgat
atgggctttgaagagcctacgccaattcaacaggaagctatcccagtagccatgagcggt
aaagacatgatcggtcaagctcaaacaggtactggtaagacagcagcatttggcttgcct
gtattggaacgcgtagatgggaatgagcgtcacgttcaagtagttattttatcccctaca
cgagaattagctatccaagtagctgaagagcttaataaaatggctcaatacacgaatatc
acagcactacctatttacggtggtcaagatattaatcgtcagttccgtgccttgaaaaaa
aatccacaaatcatcgttgccactccaggccgattgatggaccatatggatcgtggttct
atccactttgaccatgtgaaagttgtggtattggacgaagccgacgaaatgttaaacatg
ggctttgttgatgatatcaataaaatcttgggtgctatcccagaagaccatcaaacattg
ttgttctccgcaactatgcctaaagctatccaacaattagctgaaacatatttgacagag
ccaacattgattcgtatgaaaccgactcaagttacgatggacttaattgaacaatattat
atcgaagtgcaagaccgtcaaaaattcgatgttctttgccgcttgttcgatattcaaaca
cctgaacttgctattatcttcacacgtacaaaacgtcgtgttgatgaagtaactgaaggt
cttaagaaacgtggttacatggcggaaggcatccatggcgatttgtctcaacaaaaacgg
gacagcgtaatccgtcaattccgcgaaggtaccatcgatattctcgtggctactgatgtg
gcagctcgtggtcttgatatttctggcgtatctcacgtatataactacgatatgcctcaa
gatcctgaaagctacacacaccgcgtaggtcgtacaggccgtgctggtaaagctggtcaa
gctttcacgtttgttatccctcgtgaaatggagcatttacatgctatcgagcgtttaaca
aaacgtaaaattgcacgccgccgtgcaccttccttaggtgaagttcttgaaggtcaacaa
cgtttggcaattgaaagcctcgttgaaatgacagataatttagaagcattagcgccattc
aaatctagtgcagaggaattgttgaatgatacagattccgtaacacttttggcggcagct
cttaaattgttaacaaaagaaccagatacaactcctgtaaatattacagaagaaaaacca
ttgcgtgtacgccgtcgccgtgaaggtggtcgtagtgaccgacgccgtggtgaccgtcgt
agagatggtgatcgccgccgtgacggagatcgtcgtcgcgatgatcgccctcgtcgcagc
cgcgatgaccgtagaggtgaacgtcgtgatgaccgtcgcagagatgatcgtagatctgat
cgtccacgtggtgacagaaaacctcgtcatcaaggtgaaggtttcaaaccttactttaaa
gactaa
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