Veillonella nakazawae: VEIT17_13640
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Entry
VEIT17_13640 CDS
T06972
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vnk
Veillonella nakazawae
Pathway
vnk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vnk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VEIT17_13640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vnk03019
]
VEIT17_13640
03400 DNA repair and recombination proteins [BR:
vnk03400
]
VEIT17_13640
Enzymes [BR:
vnk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VEIT17_13640
Messenger RNA biogenesis [BR:
vnk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VEIT17_13640
DNA repair and recombination proteins [BR:
vnk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VEIT17_13640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RQC
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
NMDAR2_C
Motif
Other DBs
NCBI-ProteinID:
BBU34918
UniProt:
A0ABM7HD30
LinkDB
All DBs
Position
complement(1524699..1526564)
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AA seq
621 aa
AA seq
DB search
MDQQGTRKQENLKQPVVTKQQALRMLETYFGYTSFRPAQEAPIASLLRNEDVIGIMPTGA
GKSICFQIPALCKSGLTIVFSPLISLMKDQVDGLLVQNIPAALINSTLTQAEFNKTMYEV
RSGKIKLLYIAPERLGSNFFCNVLRALPIAQVIVDEAHCISEWGHDFRPSYRLIGEWLNS
LPKRPIVGAFTATATKYVENDIKKLLGLDNANVYVTGFDRPNLSFSVIRTPKRMDYVVHY
VRQHANENGIIYCATRKDVDRVYENLTRAGIKVGHYHGGLSDEVRREMQNAYADDKLQVM
VATNAFGMGIDKSNVRYVLHYQMPRNMESYYQEAGRAGRDGAPAECILLYSGQDVQVHKY
LIEQSIETPERQEVELRKLQSMIDYCFCSNCLRKYMLNYFGESTVWTTCDNCSSCKGSGD
KVNVTKEAKAIFRAIMGTDERYGASMITSIVRGERTDRIMRAGHDALPVFGLLSNVDEKS
IKGLIQQFVASGYLRSSSGKYPVLSLTAGAEEVLGGHKEVEEIRQHVSVPSRTSRSTSTT
SRGKSSSGAGGLFEHLRQHRKRLAEEAGLRPYLIFPDTVLIDLANLRPTTLGEFGNVKGV
GEAKLKKYGLSFLQAIAEYKG
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggatcaacaggggacaagaaaacaagaaaatctaaaacaaccagttgtgacaaaacaa
caagcactacgcatgttagaaacttactttgggtatacctcctttagaccggctcaagag
gctcccattgcctccttattacgcaatgaagatgtaatcggtatcatgccgacgggggca
ggtaagtctatctgttttcagatacctgcactctgcaaatcggggcttactatcgtattt
tcaccactgatttctcttatgaaagaccaagtagatggcttgttagtgcagaatatacca
gcagcgctcatcaatagtacgcttacgcaagcggagtttaataaaacgatgtacgaagtg
cgtagcggtaagattaaactcttatatattgcaccggagcgactaggttctaatttcttc
tgtaatgtgctaagagcgttgcctattgctcaagtcattgtggacgaggctcattgtatc
tccgagtggggccatgactttagaccgtcctatcgcctcatcggtgagtggctgaattca
ctgcctaaaaggcctattgtaggtgctttcacagcgacggcgacgaaatatgtagaaaat
gatatcaagaaactattaggtttagataatgcgaatgtgtacgtaacgggctttgatcgg
cctaatttatccttctctgtcatccgtacacctaagcgcatggattatgtggttcactat
gtacgccaacatgccaatgaaaatggtattatttactgtgcgacgcgtaaggatgtagat
cgagtgtacgaaaatctaacccgtgcaggcattaaggtgggccattatcatggaggtctc
agcgatgaggtgcgccgtgagatgcaaaatgcttatgcagatgataaactacaggtcatg
gtggctaccaatgcctttggtatgggtatcgacaagagtaatgtgcgctatgtgttgcat
taccaaatgccgcgcaacatggagtcctactatcaagaggcgggccgtgcaggtcgcgat
ggagctcctgcagaatgtatcttgctctacagtgggcaggatgtacaggttcataaatat
ttgattgaacagtccatcgagacacctgagcgacaagaggtggagctccgcaagttacag
tctatgattgattactgtttctgcagtaattgtttacgtaaatatatgcttaactatttt
ggtgaaagcaccgtttggactacttgcgataattgtagttcctgtaaaggctccggtgat
aaggtaaatgtaacaaaagaggcaaaggctatcttccgtgctattatgggcactgatgag
cgctatggtgcttctatgattacctctatcgtgcgcggtgagcgaactgatcgcattatg
cgagcaggccacgatgcactccctgtatttggtttactaagtaatgtagacgagaaatct
attaaagggctcattcaacaatttgtagcttctggttatttgcgtagttcttcaggtaag
tatcctgtgctatctttgacggctggcgctgaggaggtcctcggtgggcataaagaggtg
gaggaaatcaggcaacatgtgtctgtaccatctagaactagtcggtctacgtctactaca
tcacgaggaaaatctagttctggggcgggtggtttatttgaacatttacgacaacatcgc
aagcgcttagccgaagaggcagggcttcgaccatatcttatcttccccgatacagtgctt
attgacctagccaatttacgacccactacattaggtgagtttggcaatgttaagggtgta
ggggaagcaaaattgaaaaaatatggcctcagttttttacaggccattgcagaatataag
ggataa
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