KEGG   Vibrio neocaledonicus: D3H41_00520
Entry
D3H41_00520       CDS       T06228                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
vnl  Vibrio neocaledonicus
Pathway
vnl03030  DNA replication
vnl03410  Base excision repair
vnl03420  Nucleotide excision repair
vnl03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:vnl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    D3H41_00520
   03410 Base excision repair
    D3H41_00520
   03420 Nucleotide excision repair
    D3H41_00520
   03440 Homologous recombination
    D3H41_00520
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vnl03032]
    D3H41_00520
   03400 DNA repair and recombination proteins [BR:vnl03400]
    D3H41_00520
Enzymes [BR:vnl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     D3H41_00520
DNA replication proteins [BR:vnl03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     D3H41_00520
DNA repair and recombination proteins [BR:vnl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     D3H41_00520
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     D3H41_00520
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc DNA_polI_exo1
Other DBs
NCBI-ProteinID: QCO84670
LinkDB
Position
1:106969..109755
AA seq 928 aa
MASIPENPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAVYGVVNMLRSMMRQFASERIAV
VFDAKGKTFRDDMYAEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGT
LAYQASQKGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYL
ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAGLGFRGSKTMAKKLIDNK
ENAMLSYELATIKLDVELEETPESLLKAEPNKDELVKLYGQLTFKSWLNELLEGGSGSVE
AVELAGSSQASSSQAEMETSAVTIDRSQYETILDKETFNAWLDKLQTAELFAFDTETDNL
DYMLANLVGLSFAVDEGIAAYVPVAHDYLDAPEQLDRDWVLEQLKPILEDAAKAKVGQNL
KYDASVLARYDIELKGIKHDTMLESYIYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGK
NQLTFNQIELEQASPYAAEDADVTLRLHNRLFANIEQDESLKTVYEEIEMPLVPVLSRIE
RTGVFIDEMKLSAQSVEITARLDELEKKAYEIAEQEFNMNSPKQLQAILFEKMGLPVVKK
TPSGTPSTNEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQ
AVTATGRLSSTDPNLQNIPIRNEAGRRIRQAFVAPSGHKILAVDYSQIELRIMAHLSGDQ
ALLDAFRDGKDIHAATAAEIMGVSIEDVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPR
GEAQAYMDTYFERYPGVMQYMEDTRSTAADKGYVETIFGRRLHLPEIKSRNGMRRKAAER
AAINAPMQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKV
QKLMESAAELKVPLVAEAGHGDNWDQAH
NT seq 2787 nt   +upstreamnt  +downstreamnt
atggcaagtattcctgaaaatccgttgatccttatcgacggctcttcttacctatatcgc
gcttttcacgcctacccgggcaccatgagcaatggtgaaattccaactaatgccgtttac
ggcgtcgtgaacatgttacgcagcatgatgcgtcagtttgcgtctgagcgcatcgcggtg
gttttcgatgcaaagggaaaaacctttcgtgatgatatgtatgcagaatacaaagcgaat
cgtccgccaatgccggatgacctgcgttgtcaaattgaaccattacacaatgttattcgt
gcaatgggtttgccgctgatctgtgttcctggcgtcgaggcggatgacgtcatcggtacg
ttagcataccaagcatcacaaaagggcatgcctgtattgatcagtactggtgataaagac
atggcgcagctagtggatgataacattaccttgatcaacaccatgacgaacgtcgtaatg
gatcgtgaaggtgtggttgaaaagtttggcattccacctgagttgatcatcgactactta
gcactgatgggcgataaagtagataacattcctggtgtaccgggtgtcggtgataaaaca
gcgaccgcactactgcaaggcattggtggtctgacgaagttgtatgaaaacctcgatgat
attgcagggcttggtttccgtggttctaaaaccatggcgaaaaagctcatcgacaacaaa
gaaaatgccatgctttcgtatgagctagcgaccataaaattggatgttgagcttgaggaa
acgccagaatcattgctgaaagcggaaccaaataaagacgaattagtgaagctatatggc
caactgacgtttaaatcttggttgaatgaactacttgaaggcggttctggatctgtggag
gccgtagagcttgcaggatcttcacaagcttcttcttctcaagccgagatggaaacttct
gcggtaacaatcgatcgcagccaatatgaaacaattctggataaagaaaccttcaatgct
tggctagataaacttcaaacggctgagctgtttgcatttgatacggagaccgataaccta
gattacatgctagcgaatctagttggtttgtcattcgctgtcgatgaaggtattgcggct
tatgtgccagttgcacatgactatttagatgcgcctgaacagcttgatcgtgattgggta
ctagaacagctgaagccaattcttgaagatgcagcgaaagcaaaagtcggtcaaaactta
aagtatgatgcgtctgtactcgctcgttacgacattgagctaaaaggtatcaagcacgac
acgatgttggaatcgtatatctacaacagtgtcggcggtaaacacgatatggacagcttg
gcgcttcgcttcctacagcacagctgcatttcttttgagcaaattgcaggtaaaggcaaa
aatcagcttacgtttaaccaaatcgaactggaacaagcatcgccatacgcggcagaagat
gcggatgtgacccttcgtctgcacaatcgcttgtttgctaatatcgagcaggatgaaagc
ctgaagacagtttacgaagagattgaaatgccgttggtgccagttctttcgcgcattgaa
cgcactggggtctttatcgatgaaatgaagctgagtgcgcagtcggtcgagattaccgct
cgccttgatgagcttgaaaagaaagcgtacgaaattgcagagcaagagtttaacatgaac
tcgccaaagcaattacaagccatcctatttgaaaaaatgggtttaccggttgtgaagaaa
acgccatcaggcacaccatcgacgaatgaagaagttctgcaagaactcgcgctagactac
ccactaccaaaactgattttggaataccgtggtctggcgaagctaaaatcaacttacacg
gacaaactgccgaagatgatcaacccatcaacgggtcgtgtgcatacttcttaccaccaa
gcagtgaccgcaacgggtcgtctatcttctactgatccgaacttacagaatattccaatt
cgtaacgaagccggccgtcgtattcgtcaagcgtttgtcgcgccatctgggcataaaatc
ttagcggtcgactattcgcaaatcgaactgcgcatcatggcgcacctttctggcgaccaa
gcgttgttggatgcattccgtgatggcaaagatatccacgcggcaaccgcagcagaaatc
atgggtgtttctattgaagacgtttcaagtgagcaacgtcgtcgtgcgaaagcggttaat
ttcggtcttatttacggcatgagtgcgtttggtttggcgaagcaattaggcattcctcgt
ggtgaggctcaagcgtacatggatacatactttgaacgttacccaggcgtgatgcagtac
atggaagacacacgcagcacggcagcagataaagggtatgttgaaacgatttttggtcga
cgtttgcatttaccagaaatcaaatcgcgcaacgggatgcgtcgtaaagctgctgaacgt
gcggcaatcaacgcaccaatgcaaggtacggctgcggacatcattaagaaagcgatgctg
ttggttgatcagtggattcaggaagaaggcaatggtcgtgtgaagttattaatgcaagta
cacgatgaattggtctttgaagttgaagagtcatcattgtccgaaattgaaagtaaagta
cagaaattgatggaatctgcagcagagctaaaagtaccgttggttgcagaagcaggtcac
ggtgataactgggatcaagctcattag

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