Vibrio neocaledonicus: D3H41_00965
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Entry
D3H41_00965 CDS
T06228
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
vnl
Vibrio neocaledonicus
Pathway
vnl03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vnl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
D3H41_00965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vnl03400
]
D3H41_00965
Enzymes [BR:
vnl01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
D3H41_00965
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
D3H41_00965
DNA repair and recombination proteins [BR:
vnl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
D3H41_00965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_IS1595
Zn_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
QCO84754
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All DBs
Position
1:200183..200992
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AA seq
269 aa
AA seq
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MPELPEVEVSRMGISPHMVGQTIQSFTFRTPKLRWDIPTELKKLEGQVIRAISRRAKYLL
IETNTGTAIVHLGMSGSLRVLDADFPPAKHDHVDLKLSSGKILRYNDPRRFGAWLWCAPG
ESHAVLANMGPEPLTEEFNAEYVAEKAKNKRVAVKQFIMDNKVVVGVGNIYANESLFKSR
IHPSRPAGKLTSQEWGLLVENIKMTLEIAITQGGTTLKDFAQADGKPGYFAQELLVYGKA
GEPCPECGERLQELKIGQRNTFFCSECQK
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagttgccagaagttgaagtcagccgtatggggattagcccccacatggttgga
caaacgatccagtcgtttacttttcgaacgcctaaattgcgctgggatattcctacagag
cttaaaaaattggaagggcaggtgatccgtgcgattagccgtcgtgcgaaatacttactg
atcgagacaaacacaggtacagccattgttcacttgggcatgtctgggtctttacgtgtc
ctagatgccgactttccgccagcaaagcacgatcatgtggatctcaaactaagcagtgga
aaaatactgcgttataacgatccgcgtcgttttggggcatggctgtggtgtgctcctggc
gagtcacatgctgtgctagcaaacatggggcctgagcctttaactgaagagttcaatgcg
gaatatgtagcggagaaagctaaaaataagcgtgtcgccgtcaagcagttcatcatggac
aacaaagtcgtggttggtgtcggaaatatctacgcgaatgagtcgttgtttaaatctcga
attcacccttcaaggcccgcaggtaagttgacttctcaagagtgggggttacttgttgaa
aatatcaaaatgacacttgagattgccattacgcaaggtgggactacgctgaaagatttt
gcgcaagccgatggaaagccgggttactttgcacaagagttattggtttacggaaaagcc
ggagagccatgcccagagtgcggcgaacgacttcaagagctaaagattggccaacgtaat
accttcttttgtagtgagtgtcagaagtaa
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