Vibrio neocaledonicus: D3H41_01405
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Entry
D3H41_01405 CDS
T06228
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
vnl
Vibrio neocaledonicus
Pathway
vnl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vnl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D3H41_01405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vnl03021
]
D3H41_01405
03400 DNA repair and recombination proteins [BR:
vnl03400
]
D3H41_01405
Enzymes [BR:
vnl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D3H41_01405
Transcription machinery [BR:
vnl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D3H41_01405
DNA repair and recombination proteins [BR:
vnl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D3H41_01405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
TrkA_N
Motif
Other DBs
NCBI-ProteinID:
QCO84839
LinkDB
All DBs
Position
1:274503..275495
Genome browser
AA seq
330 aa
AA seq
DB search
MQGSVTEFLKPRLVDIEQISSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IEGVLHEYSTKEGVQEDILEILLNLKGLAVRVAEGKDEVFITLNKSGSGPVVAGDITHDG
DVEIANPEHVICHLTDDNAEIAMRIKVERGRGYVPASARIHNEEDERPIGRLLVDATYSP
VDKIAYAVEAARVEQRTDLDKLVIDMETNGTLEPEEAIRRAATILAEQLDAFVDLRDVRV
PEEKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKS
LTEIKDVLASRGLSLGMRLENWPPASIAED
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgtaacagaatttcttaagccacgtctagttgacatcgaacaaatcagc
tcgactcacgcaaaagtaactcttgagccattagagcgtggctttggtcatactctgggt
aatgcacttcgccgcatccttctatcttctatgccaggttgtgctgtaacagaagtagaa
attgaaggcgtacttcatgagtacagcacgaaagaaggcgttcaagaagatattcttgaa
attcttctaaaccttaaaggtttggctgtgcgcgttgccgaaggcaaagatgaagtgttc
attactttgaacaaatcaggctcgggccctgtggttgcaggtgacatcacccatgatggt
gatgtagagatcgctaaccctgaacacgtaatttgtcacctaacggatgacaacgctgag
atcgcaatgcgtatcaaagttgaacgtggtcgtggttatgttccagcttctgcgcgtatc
cataacgaagaagacgagcgtcctatcggtcgcctactagtagatgctacttacagccca
gtagacaaaattgcctacgctgtagaagcagctcgtgtagaacagcgtactgatctagac
aagcttgttatcgatatggaaacaaacggtactctagaacctgaggaagcaatccgtcgt
gcagctacaatcctagctgaacaattggatgcattcgtagatcttcgtgatgtacgagtt
cctgaggagaaggaagagaagccagaattcgatccgatcctactgcgtcctgtagacgat
cttgaactaacagttcgctctgctaactgtctgaaagcagaagcgattcactacatcggt
gatctagtacaacgtactgaggttgagctacttaaaacgcctaaccttggtaaaaaatct
cttactgagattaaagacgtacttgcgtcacgtggtctgtctctgggcatgcgcctagaa
aactggccacctgcatcaatcgctgaagattaa
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