Vibrio neocaledonicus: D3H41_02380
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Entry
D3H41_02380 CDS
T06228
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
vnl
Vibrio neocaledonicus
Brite
KEGG Orthology (KO) [BR:
vnl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vnl03009
]
D3H41_02380 (srmB)
Enzymes [BR:
vnl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D3H41_02380 (srmB)
Ribosome biogenesis [BR:
vnl03009
]
Prokaryotic type
rRNA helicases
D3H41_02380 (srmB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_C_2
AAA_11
UvrD-helicase
UMPH-1
AAA_30
Utp25_C
AtuA_ferredoxin
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QCO85020
LinkDB
All DBs
Position
1:complement(491951..493174)
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AA seq
407 aa
AA seq
DB search
MIRTFAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLP
ALQYLQDFPRRKPGPARILILTPTRELAMQIADQARALAKNTKLNIFTITGGVQYQEHAD
ILATTQDIVVATPGRLKEYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWR
KQTLLFSATLEGKGVEGFTADLLNDPAEIDAKSPLRERKKIAQWYHRADDAEHKLELLKH
IITQQAERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFRDGTVNVL
LATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDR
VARYVKEDIKERFVKEMRPKHKKPVFKKKKKKDDKKKVAKKKTAKKK
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
gtgatcagaacctttgctgaacttgatctagaccaaaacctacttgaagccattgaagag
atgggttacgaacgcccaacaaaaattcaggcagaagcgattccacaagcgttggacggt
cgtgacattctagcgtcagcgccaacaggaactggtaaaacggccgccttcgtcctgcca
gcattgcaatacttgcaagacttccctcgtcgtaagcctgggcctgcgcgtattttgatc
ctaacgcctactcgcgaactggcgatgcaaattgccgatcaagcacgtgctttggcaaaa
aataccaaactcaacattttcaccatcactggtggtgttcagtaccaagagcacgccgac
atccttgcaacaacacaagacattgtggttgcgacacctggccgtttaaaagaatacatt
gatgcagaacgttttgattgtcgtgcaatcgaatggttaatccttgatgaagcagaccgt
atgctagatatgggttttgctcctactgtcgatcgcctatctaacgaatgtcgctggcgt
aagcaaacccttctgttctcagcaacgttagaagggaaaggcgtagaaggctttaccgct
gatctgttgaatgacccagcagagattgatgcaaaatcgccgctgcgtgagcgtaagaaa
attgctcagtggtaccaccgagctgatgatgcagaacacaaactggaattactaaaacac
attattactcagcaagctgagcgcactatcgtctttttaaagactcgtgagcgtttggct
gagctacgagcgcagcttgaaagtgcacagattccatgttcttggattcaaggtgaaatg
ccgcaagatcgtcgtaacaatgcgatttctcgcttccgcgatggaactgtgaacgtgctg
ctcgcgacggacgttgctgcgcgtggtatcgatcttccggatgtatcacacgttatcaac
tacgacatgccgcgcacggctgatgtttaccttcaccgtatcggccgtacggctcgcgca
ggtaagaaaggtaacgctatctcaatcgtagaagcacacgaccaaccaatgatggatcgc
gttgcacgttacgtgaaagaagacatcaaagagcgtttcgtgaaagagatgcgtcctaaa
cacaaaaagcctgtgtttaagaagaaaaagaaaaaagacgacaagaaaaaagtagcgaaa
aagaaaaccgctaagaagaagtaa
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