Vibrio neocaledonicus: D3H41_03580
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Entry
D3H41_03580 CDS
T06228
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
vnl
Vibrio neocaledonicus
Pathway
vnl00260
Glycine, serine and threonine metabolism
vnl00460
Cyanoamino acid metabolism
vnl00630
Glyoxylate and dicarboxylate metabolism
vnl00670
One carbon pool by folate
vnl00680
Methane metabolism
vnl01100
Metabolic pathways
vnl01110
Biosynthesis of secondary metabolites
vnl01120
Microbial metabolism in diverse environments
vnl01200
Carbon metabolism
vnl01230
Biosynthesis of amino acids
vnl01240
Biosynthesis of cofactors
vnl04981
Folate transport and metabolism
Module
vnl_M00140
C1-unit interconversion, prokaryotes
Brite
KEGG Orthology (KO) [BR:
vnl00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
D3H41_03580
09102 Energy metabolism
00680 Methane metabolism
D3H41_03580
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
D3H41_03580
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
D3H41_03580
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
D3H41_03580
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
D3H41_03580
Enzymes [BR:
vnl01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
D3H41_03580
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Gene cluster
GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
Beta_elim_lyase
DegT_DnrJ_EryC1
OKR_DC_1
Aminotran_5
Motif
Other DBs
NCBI-ProteinID:
QCO85238
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Position
1:747187..748437
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AA seq
416 aa
AA seq
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MLKRDMNIADYDAELFAAIQEETLRQEEHIELIASENYTSPRVMEAQGSQLTNKYAEGYP
GKRYYGGCEYVDKAEALAIERACQLFGCEYANVQPHSGSQANSAVYMALLNPGDTVLGMS
LAHGGHLTHGSPVNFSGKHYNVIPYGIDEAGQINYDEMEQLALEHKPKMIIGGFSAYSQI
VDWKRMREIADKAGAYLFVDMAHVAGLIAAGEYPTPVPHAHVVTTTTHKTLAGPRGGLIL
SNAGEDMYKKLNSAVFPGGQGGPLMHVIAGKAVAFKEAMEPEFKAYQARVVKNAKAMVGQ
FQERGYKIVSNGTENHLFLVDLIDKDITGKDADAALGAANITVNKNSVPNDPRSPFVTSG
IRVGTPAITRRGFTEEDAKELANWMCDVLDNIGNEEVIEATKQKVLEICKRLPVYA
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgcttaagcgtgatatgaacatcgcagattacgatgcggaactgttcgcagctatccag
gaagaaactcttcgccaggaagaacacattgaacttatcgcttctgaaaactacacaagc
ccacgtgtaatggaagcgcaaggttctcagctaacgaacaaatacgctgaaggctaccca
ggtaagcgttactacggcggttgtgagtacgtagataaagctgaagcactagcaattgag
cgtgcatgccaactatttggttgtgagtacgctaacgtacagcctcactcaggttctcaa
gcaaacagcgcagtttacatggcgcttcttaaccctggcgatacagttttaggcatgagc
ctagcgcacggtggtcacctaactcacggttcaccagtaaacttctctggtaagcactac
aacgttatcccttacggtatcgatgaagctggtcaaatcaactacgacgagatggaacag
ctagcacttgaacacaaacctaagatgatcatcggtggtttctctgcttactcgcaaatc
gttgattggaaacgcatgcgtgaaatcgctgacaaagcaggtgcttacttatttgttgat
atggcgcacgtagctggtcttatcgccgccggtgaatacccaacaccagtaccgcatgct
cacgtggtaacaacaacgacgcacaaaacactagcaggtcctcgcggtggtcttatcttg
tcaaatgctggcgaagatatgtacaagaaactgaactcagcagtgttccctggtggtcaa
ggtggccctctaatgcacgttatcgctggtaaagcagtagcgttcaaagaagcgatggag
ccagagttcaaagcttatcaagctcgcgtagtgaaaaacgcaaaagcaatggttggtcag
ttccaagagcgtggctacaaaatcgtatctaatggtacagaaaaccacttgttccttgtt
gacctaatcgacaaagatatcactggtaaagacgcagacgcggcactaggtgcagcaaac
atcactgtaaacaagaactcagtaccaaatgacccacgcagcccattcgtaacgtctggt
atccgtgtaggtacgccagcgatcactcgccgtggcttcactgaagaagatgcaaaagag
ctagcaaactggatgtgtgacgttctagataacatcggcaacgaagaagttatcgaagcg
acaaaacagaaagtgctagaaatttgtaagcgtctaccggtttacgcctaa
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