Vibrio neocaledonicus: D3H41_04450
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Entry
D3H41_04450 CDS
T06228
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
vnl
Vibrio neocaledonicus
Brite
KEGG Orthology (KO) [BR:
vnl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vnl03016
]
D3H41_04450 (rnd)
Enzymes [BR:
vnl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
D3H41_04450 (rnd)
Transfer RNA biogenesis [BR:
vnl03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
D3H41_04450 (rnd)
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
LRS4
Motif
Other DBs
NCBI-ProteinID:
QCO87605
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All DBs
Position
1:904793..905911
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AA seq
372 aa
AA seq
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MNYQIITKNKDLEEVCTHAREADVVMLDTEFVRIRTFYPQLGLIQLFDGNRLSLIDPTEL
TDMTPFVALLKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFLGHGLSTGFAS
LVEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLFDKVTQAGWWEAVQ
QESDLLVSKRIRVTNEENAYLDIKGAWQLKPSELAILKPLATWRYREAIKRDLALNFIFK
EGDLLTVARLGLTNFKKMEAEDIDIRAINRHGAKIAAIVKQAKQTPSEEYPAKIERLMDY
PGYKQVFKNMKDLVKSASQKSGLATEFLASKKQINQLISWVWKKDRDPEVLPDLMQGWRL
DLLGDKMNKALK
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
gtgaactatcaaattattactaaaaacaaagacctagaagaggtttgcactcatgcccga
gaggcagacgtagtgatgctggataccgaattcgttcgtattcgcactttctacccgcag
ttaggtctgattcagcttttcgatggtaatcgcctctcgctgattgatccgactgaatta
acggatatgacgccgtttgtagcgctattaaaagatacttctgtgctaaaagtgctgcac
gcatgtggtgaagatttagaagttttccaaaacgcttttggttgtacaccattccctatg
gtggatacgcagctgatggccgcttttctcggtcacggcctatcgacaggcttcgcatcg
ctggtggaagaatatttaggcgtagagctcgacaaaagtgaatcacgtaccgactggatg
gctcgtccactgacacaaaagcaattagattatgctgccgcagatgttcattacttgtta
ccgttatacgaaaagctgttcgataaggtgacgcaagcaggttggtgggaagctgtacag
caagaaagtgatttactcgtttcgaaacgtattcgcgtaaccaatgaagagaatgcctac
cttgatattaagggcgcttggcaattaaaaccttctgagctggcgattttaaagccattg
gcgacgtggcgttatcgtgaagcaatcaaacgagatttagcgctgaactttatcttcaaa
gaaggtgatctattaacggtcgctcgtcttggtttaacgaactttaagaagatggaagca
gaagatattgatatccgagcgattaaccgccatggcgcgaagattgccgcgattgttaaa
caagcgaagcaaacaccttctgaagagtatcctgcgaaaattgagcgtttaatggactat
ccgggttacaagcaggtcttcaaaaatatgaaagacttggtgaaatcggcttcgcagaag
tctggtttagccacggagttccttgcctctaaaaagcagatcaatcagttgatcagttgg
gtttggaaaaaagatcgtgacccagaagtgttgcctgatttgatgcaagggtggcgtttg
gatttactcggcgacaagatgaacaaagcattaaagtaa
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