Vibrio neocaledonicus: D3H41_05195
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Entry
D3H41_05195 CDS
T06228
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vnl
Vibrio neocaledonicus
Brite
KEGG Orthology (KO) [BR:
vnl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vnl03032
]
D3H41_05195 (topA)
03400 DNA repair and recombination proteins [BR:
vnl03400
]
D3H41_05195 (topA)
Enzymes [BR:
vnl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
D3H41_05195 (topA)
DNA replication proteins [BR:
vnl03032
]
Prokaryotic type
DNA Topoisomerases
D3H41_05195 (topA)
DNA repair and recombination proteins [BR:
vnl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
D3H41_05195 (topA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Motif
Other DBs
NCBI-ProteinID:
QCO85515
LinkDB
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Position
1:1065139..1067769
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AA seq
876 aa
AA seq
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MGKSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTAGQSTGEKKAAAISTKGMSPE
EKARVKKEKDRKALIKKMGINPYHDWEANYQILPGKEKVVNELQKLAKDADCVYLATDLD
REGEAIAWHLREIIGGDEERYKRVVFNEITKNAIQQAFQTPGELNMDGVNAQQARRFMDR
VVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREINAFVPEEFWDIHANTKTKDKAD
FKLLVAQKDGSAFKPVNEAETKAAMSVLENASYEVCKREDRPTKSKPSAPYITSTLQQAA
STRLGYGVKKTMMLAQRLYEAGYITYMRTDSTNLSAEAVDAVRDFIGSEFGDKYLPAKPL
TYGSKEGAQEAHEAIRPSNVGVKAEDLQGVDADAHKLYALIWNQFVACQMTPAEYDSTTI
SVKAAEYTLKAKGRILKFDGWTRVQRPMGKNEDTILPAVQLGDKLSLESLDPKQHFTKPP
ARYTEAALVKELEKRGIGRPSTYASIISTIQDRGYVKVDQRRFYAEKMGEIVTDRLDDSF
NDLMNYDFTARMEQKLDQIAEGEVNWKAVLDNFFADFTGDLEKAELDESEGGMKLNHIVM
TDIECPTCSRPMGIRTASTGVFLGCSGYALPPKERCKTTINLGDEEGIINVLEEDVETAA
LRAKKRCPICETAMDAYLIDDKRKMHVCGNNPNCEGYLVEYGEFKVKGYDGPVVECDKCG
SDMVLKNGRFGKYMDCTSETCKNTRKILKNGEVAPPKEDPVHFPELPCENSDAYFVLRDG
ASGLFMAASNFPKSRETRAPLVAELARFEERLPEKFKYLATAPQEDPDGRPAVVRFSRKT
KENYVRSEENGKPSGWTALFVDGKWEVTDKRKKAKA
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcactcgttatagtggagtcaccagccaaggcaaagacgataaataagtac
cttggtaaagactttattgttaagtctagtgttggtcatgtgcgtgatctgcctacggcc
ggtcaaagcactggtgagaaaaaagccgcagccatctcaactaaagggatgagtccggaa
gagaaagcgcgcgttaaaaaagagaaagaccgcaaagcgttgatcaaaaagatggggatt
aacccatatcatgactgggaagcgaattaccaaatccttccaggcaaagaaaaagttgtc
aacgaactacaaaaactcgccaaagacgcagattgcgtttatctcgcaaccgatttggac
cgcgaaggggaagcaatcgcatggcaccttcgtgagatcatcggtggcgatgaagagcga
tacaaacgtgtagtttttaacgaaattacgaaaaacgcgatccaacaagctttccagaca
cctggcgagctgaacatggatggtgtaaatgcccaacaagcacgtcgcttcatggaccgt
gtcgttggttttatggtttcacctctactttggaaaaaagtggctcgtggcttatctgct
ggtcgagtgcagtctgttgcggtgaaattgttagttgagcgtgagcgtgagattaacgcg
tttgtaccagaagaattctgggacattcatgcgaatacgaaaacgaaagacaaagcggac
tttaaactgcttgttgctcagaaagacggttctgcgtttaagccagttaatgaggcagaa
accaaagcagcgatgtctgtacttgagaatgcaagttacgaagtatgtaagcgtgaagac
cgccctacaaagagcaagccctcagcaccttacatcacctctacgcttcaacaggcagca
agtacacgtctgggctacggcgtgaaaaagaccatgatgctagctcagcgcctctatgag
gccggttacatcacttatatgcgtactgactcgactaacctaagtgccgaggctgtggac
gctgtacgtgactttattggttctgagtttggtgataagtacctaccagcgaaaccattg
acgtacggtagcaaagaaggagcacaggaagcgcacgaagcgatccgcccttcaaatgtg
ggtgttaaggcggaagacctgcaaggtgtcgatgctgatgcgcacaaactttatgctttg
atttggaatcagtttgtagcgtgtcaaatgacgccagcagaatacgattcaacaaccatt
agcgtaaaagcggcagaatacacgcttaaagcgaaaggccgtatccttaaatttgacggc
tggactcgtgtacagcgtccaatgggcaaaaacgaggatacaatccttccagcggtacaa
cttggcgataagctaagcttagagtcacttgaccctaaacagcactttacaaagccacct
gcgcgctacactgaagcagcactggttaaagagctggagaaacgaggcattggtcgtccg
tcgacttacgcatcgatcatttctacgattcaagatcgtggctacgtgaaagttgatcag
cgccgtttctacgctgaaaaaatgggtgaaattgttactgaccgccttgatgacagcttt
aacgatttgatgaactacgactttactgcgcgtatggaacagaaattggaccaaatcgct
gaaggtgaagtgaactggaaagctgtgttagacaacttctttgctgattttactggcgat
cttgaaaaagcggagctggatgagtcagaaggcggtatgaagttaaaccacatcgtcatg
acggatatcgagtgtccgacgtgtagccgtccaatgggcatccgtactgcttcgacaggt
gtgttcttaggctgttcaggttacgcgttaccaccaaaagagcgttgtaagacaaccatc
aacttgggtgacgaagaaggtattattaacgttctagaagaagacgttgaaaccgcagct
cttcgtgctaaaaagcgttgtccgatctgtgaaacagcgatggacgcatacctgattgat
gacaagcgtaagatgcatgtttgtggtaataacccgaactgtgaaggctaccttgttgaa
tacggcgagttcaaagtaaaaggctacgatggtccagttgttgaatgtgacaaatgtggc
tctgatatggtgcttaagaacggtcgctttggtaaatacatggattgtacgagcgaaacg
tgcaagaacactcgaaagatcttgaagaatggcgaagtcgcgcccccgaaagaagatcct
gttcatttccccgagttgccatgtgaaaactcagatgcgtatttcgtacttcgtgatggt
gcttcaggtctatttatggcggcaagcaacttcccgaaatcgcgcgagacacgtgctcct
ttggttgctgaactggcacgttttgaagagcgtttacctgagaagttcaaatacctagcg
accgcaccgcaagaagatcctgatggtcgtcctgcagttgtacgctttagtcgcaaaaca
aaagagaactacgttcgttcggaagagaatggcaaaccatctggttggacagcgctcttt
gttgacggtaagtgggaagtcactgataagcgtaaaaaagcgaaagcataa
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